Preprints
Filtering by Subject: Population Biology
Statistical inference for seed mortality and germination with seed bank experiments
Published: 2021-12-21
Subjects: Ecology and Evolutionary Biology, Life Sciences, Population Biology
Plant population ecologists regularly study soil seed banks with seed bag burial and seed addition experiments. These experiments contribute crucial data to demographic models, but we lack standard methods to analyze them. Here, we propose statistical models to estimate seed mortality and germination with observations from these experiments. We develop these models following principles of event [...]
ROBITT: a tool for assessing the risk-of-bias in studies of temporal trends in ecology
Published: 2021-11-24
Subjects: Ecology and Evolutionary Biology, Life Sciences, Population Biology
1. Aggregated species occurrence and abundance data from disparate sources are increasingly accessible to ecologists for the analysis of temporal trends in biodiversity. However, sampling biases relevant to any given research question are often poorly explored and infrequently reported; this has the potential to undermine statistical inference. In other disciplines, but particularly medicine, [...]
Revticulate: An R framework for interaction with RevBayes
Published: 2021-10-02
Subjects: Ecology and Evolutionary Biology, Life Sciences, Population Biology
1: Phylogenetic methods are increasingly complex. Researchers need to make many choices about how to model different aspects of the data appropriately. It is increasingly common to deploy hierarchical Bayesian models in which different data types may be described by different processes. This necessitates tools to help users understand model assumptions more clearly. 2: We describe the package [...]
Learning from your mistakes: a novel method to predict the response to directional selection
Published: 2021-09-27
Subjects: Animal Sciences, Computational Biology, Ecology and Evolutionary Biology, Evolution, Genetics, Genetics and Genomics, Life Sciences, Other Ecology and Evolutionary Biology, Population Biology
Predicting how populations respond to selection is a key goal of evolutionary biology. The field of quantitative genetics provides predictions for the response to directional selection through the breeder’s equation. However, differences between the observed responses to selection and those predicted by the breeder’s equation occur. The sources of these errors include omission of traits under [...]
Metapopulation-level associations in mutualistic stream fishes
Published: 2021-09-03
Subjects: Ecology and Evolutionary Biology, Life Sciences, Population Biology, Terrestrial and Aquatic Ecology
Positive biotic interactions are recognized as important factors determining species distributions. Although effects of positive interactions have often been observed at local scales, much less is known about consequences at larger spatial scales such as metapopulation dynamics. Here, we study nest associations of stream fishes - widespread reproductive mutualism between host (nest-builder) and [...]
Nest-boxes alter the reproductive ecology of urban cavity-nesters in a species-dependent way
Published: 2021-08-25
Subjects: Animal Sciences, Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Ornithology, Population Biology
To mitigate the shortage of natural breeding sites in cities, nest-boxes are provided for cavity-nesters. However, these are not the breeding sites these animals originally evolved in and optimised their breeding performance to. It thus remains inconclusive if nest-boxes can provide adequate substitutes, ensuring equivalent fitness returns for breeding animals. Additionally, the majority of [...]
Roadkill in a time of pandemic: the analysis of wildlife-vehicle collisions reveals the differential impact of COVID-19 lockdown over mammal assemblages
Published: 2021-07-20
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Life Sciences, Population Biology
Collisions with vehicles are a major anthropogenic cause of mortality for wildlife, with conservation and evolutionary implications. Due to the COVID-19 pandemic, many countries worldwide enforced lockdowns which importantly reduced traffic, and therefore had unprecedented consequences for global wildlife populations. We modeled how the two lockdown periods in spring and autumn 2020 influenced [...]
The macroevolutionary consequences of niche construction in microbial metabolism
Published: 2021-05-31
Subjects: Bioinformatics, Computational Biology, Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Evolution, Genetics and Genomics, Life Sciences, Microbiology, Population Biology, Systems Biology
Microorganisms display a stunning metabolic diversity. Understanding the origin of this diversity requires understanding how macroevolutionary processes such as innovation and diversification play out in the microbial world. Metabolic networks, which govern microbial resource use, can evolve through different mechanisms, e.g. horizontal gene transfer or de novo evolution of enzymes and pathways. [...]
Quantifying the checks and balances of decentralised governance systems for adaptive carnivore management
Published: 2021-05-05
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Population Biology
1. Recovering or threatened carnivore populations are often harvested to minimise their impact on human activities, such as livestock farming or game hunting. Increasingly, harvest quota decisions involve a set of scientific, administrative and political institutions operating at national and sub-national levels whose interactions and collective decision-making aim to increase the legitimacy of [...]
Evolution of pathogen tolerance and emerging infections: A missing experimental paradigm
Published: 2021-04-27
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences, Population Biology
Researchers worldwide are repeatedly warning us against future zoonotic diseases resulting from mankind’s insurgence into natural ecosystems. The same zoonotic pathogens that cause severe infections in a human host fail to produce any disease outcome in their natural hosts. What precise features of the immune system enable natural reservoirs to carry these pathogens so efficiently? To understand [...]
Drivers and Consequences of Partial Migration in an Alpine Bird Species
Published: 2021-04-19
Subjects: Behavior and Ethology, Biology, Ecology and Evolutionary Biology, Life Sciences, Population Biology
1. Partial migration, where a portion of the population migrates between winter and summer (breeding) areas and the rest remains year-round resident, is a common phenomenon across several taxonomic groups. Several hypotheses have been put forward to explain why some individuals migrate while others stay resident, as well as the fitness consequences of the different strategies. Yet, the drivers [...]
Contrasting climate velocity impacts in warm and cool locations show that effects of marine warming are worse in already warmer temperate waters
Published: 2021-03-31
Subjects: Ecology and Evolutionary Biology, Life Sciences, Marine Biology, Population Biology, Terrestrial and Aquatic Ecology
Species responses to climate change are often measured at broad spatiotemporal scales, which can miss fine-scale changes that are relevant to conservation and fisheries management. We develop a scale-able geostatistical approach to assess how juvenile and adult fish distributions have been shaped by changes in bottom temperature and dissolved oxygen over a recent decade of warming in the [...]
Deploying Ecological Countermeasures as a Biosecurity Imperative
Published: 2021-03-08
Subjects: Animal Sciences, Biodiversity, Biology, Ecology and Evolutionary Biology, Environmental Public Health, Epidemiology, Immunity, Immunology and Infectious Disease, Immunology of Infectious Disease, Immunopathology, International Public Health, Life Sciences, Maternal and Child Health, Medicine and Health Sciences, Other Immunology and Infectious Disease, Population Biology, Public Health, Terrestrial and Aquatic Ecology, Veterinary Infectious Diseases, Veterinary Medicine, Veterinary Microbiology and Immunobiology, Veterinary Pathology and Pathobiology, Zoology
The COVID-19 pandemic has brought biosecurity to the forefront of national security policy. Land use change is a fundamental driver of zoonotic disease outbreaks, yet substantial study is yet required to unravel the mechanisms by which land use-induced spillover operates. Ecological degradation may be the 21st Century’s most overlooked security threat. Within the biosecurity context, we introduce [...]
Do macrophytes act as restaurants for fishes in tropical beaches? An approach using stomach content and prey availability analyses
Published: 2021-03-05
Subjects: Ecology and Evolutionary Biology, Life Sciences, Population Biology
Tropical sandy beaches have low primary productivity, thus depend on external food sources. Generally, allochthonous macrophytes, form the basis of these food webs, and also may influence factors such as fish’s abundance, richness, species composition, and biomass. However, the role of macrophytes to the feeding ecology of fishes in tropical sandy beaches is uncertain. We aim to explain if this [...]
CEUTA snowy plover open access data - COMMENTARY
Published: 2021-02-11
Subjects: Behavior and Ethology, Biodiversity, Biology, Ecology and Evolutionary Biology, Evolution, Life Sciences, Population Biology
Eberhart-Phillips et al. (2020, Scientific Data 7: 149) recently published a data-paper CeutaOPEN. However, the publication has significant shortcomings: the article does not explain the history nor the context of the project, it did not give credit to the developers of field methodology and data structure, and fails to acknowledge key contributions to the project. We request correcting these [...]