Preprints
Filtering by Subject: Physical Sciences and Mathematics
Scientific maps should reach everyone: a straightforward approach to let colour blind people visualise spatial patterns
Published: 2022-09-09
Subjects: Computer Sciences, Earth Sciences, Environmental Sciences, Mathematics, Physical Sciences and Mathematics
Maps represent powerful tools to show the spatial variation of a variable in a straightforward manner. A crucial aspect in map rendering for its interpretation by users is the gamut of colours used for displaying data. One part of this problem is linked to the proportion of the human population that is colour blind and, therefore, highly sensitive to colour palette selection. The aim of this [...]
First recorded outbreak of Veronaea botryosa in North American amphibians: clinicopathologic features of a rare cause of phaeohyphomycosis in captive White’s tree frogs (Litoria caerulea)
Published: 2022-08-04
Subjects: Life Sciences, Medicine and Health Sciences, Physical Sciences and Mathematics, Veterinary Infectious Diseases, Veterinary Medicine
We describe fatal phaeohyphomycosis due to Veronaea botryosa in captive White’s tree frogs (Litoria caerulea), the first confirmed report in amphibians in North America. Over 15 months, six frogs developed ulcerative dermatitis on distal extremities/ventrum, which in one animal progressed to vasculitis and necrotizing osteomyelitis. All six frogs died. Clinicopathologic findings, diagnostic [...]
Research protocol: The effectiveness of feed efficiency and husbandry in mitigating the enteric methane emissions of dairy and beef cattle in temperate farming systems; a rapid synthesis and network meta-analysis
Published: 2022-07-11
Subjects: Environmental Sciences, Other Environmental Sciences, Physical Sciences and Mathematics, Sustainability
Beef and dairy cattle of temperate farming systems will be studied to investigate the relationships between their methane emissions as well as their efficiencies as milk and beef producers. The investigation will comprehensively utilise all research published on this topic to date via a formalised rapid review and analysing it together through a network meta-analysis. The use of organic versus [...]
Uneven biodiversity sampling across redlined urban areas in the United States
Published: 2022-06-09
Subjects: Biodiversity, Demography, Population, and Ecology, Environmental Monitoring, Environmental Sciences, Inequality and Stratification, Life Sciences, Physical Sciences and Mathematics, Social and Behavioral Sciences, Sociology, Urban Studies and Planning
Citizen science data has rapidly gained influence in urban ecology and conservation planning, but with limited understanding of how such data reflects social, economic, and political conditions and legacies. Understanding patterns of sampling bias across socioeconomic gradients is critical to accurately map and understand biodiversity patterns, and to generating representative and just [...]
Decline effects are rare in ecology: Comment
Published: 2022-06-06
Subjects: Ecology and Evolutionary Biology, Life Sciences, Physical Sciences and Mathematics, Statistical Methodology, Statistical Models, Statistics and Probability
Recently, Costello and Fox (2022) tested, with a large dataset, the hypothesis of whether there is a widespread decline effect in the discipline of ecology. In other words, the magnitude of the reported ecological effect sizes declines over time (Leimu and Koricheva 2004). Contrary to early results from much smaller datasets (Jennions and Møller 2002, Barto and Rillig 2012), Costello and Fox [...]
GridDER: Grid Detection and Evaluation in R
Published: 2022-05-23
Subjects: Biodiversity, Ecology and Evolutionary Biology, Environmental Sciences, Life Sciences, Physical Sciences and Mathematics
Observations and collections of organisms form the basis of our understanding of Earth’s biodiversity and are an indispensable resource for global change studies. Geographic information is key, serving as the link between organisms and the environments they reside in. However, the geographic information associated with these records is often inaccurate, thus limiting their efficacy for research. [...]
Multi-population analysis reveals spatial consistency in drivers of population dynamics of a declining migratory bird
Published: 2022-04-21
Subjects: Biodiversity, Biology, Biostatistics, Ecology and Evolutionary Biology, Life Sciences, Longitudinal Data Analysis and Time Series, Physical Sciences and Mathematics, Population Biology, Research Methods in Life Sciences, Statistical Methodology, Statistical Models, Statistics and Probability, Survival Analysis, Terrestrial and Aquatic Ecology
Many migratory species are in decline across their geographical ranges. Single-population studies can provide important insights into drivers at a local scale, but effective conservation requires multi-population perspectives. This is challenging because relevant data are often hard to consolidate, and state-of-the-art analytical tools are typically tailored to specific datasets. We capitalized [...]
Interpolation of temporal biodiversity change, loss, and gain across scales: a machine learning approach
Published: 2022-03-15
Subjects: Applied Statistics, Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Physical Sciences and Mathematics, Statistics and Probability
1. Estimates of temporal change of biodiversity, and its components loss and gain, are needed at local and geographical scales. However, we lack them because of data in-completeness, heterogeneity, and lack of temporal replication. Hence, we need a tool to integrate heterogeneous data and to account for their incompleteness. 2. We introduce spatiotemporal machine learning interpolation that can [...]
Pattern-based identification and mapping of landscape types using multi-thematic data
Published: 2022-03-06
Subjects: Earth Sciences, Environmental Sciences, Physical Sciences and Mathematics
Categorical maps of landscape types (LTs) are useful abstractions that simplify spatial and thematic complexity of natural landscapes, thus facilitating land resources management. A local landscape arises from a fusion of patterns of natural themes (such as land cover, landforms, etc.), which makes an unsupervised identification and mapping of LTs difficult. This paper introduces the integrated [...]
The costs of abating threats to Australias biodiversity
Published: 2022-02-04
Subjects: Biology, Ecology and Evolutionary Biology, Environmental Sciences, Life Sciences, Natural Resources Management and Policy, Physical Sciences and Mathematics
1. Budgeting for biodiversity conservation requires realistic estimates of the costs of threat abatement. However, data on the costs of managing threats to biodiversity is often unavailable or unable to be extrapolated across relevant locations and scales due to a lack of transparency and consistency in how it was collated. Conservation expenditure largely occurs without a priori estimates costs [...]
Nutrient and phytoplankton dynamics of the Hunter River estuary
Published: 2021-12-28
Subjects: Environmental Monitoring, Environmental Sciences, Physical Sciences and Mathematics
Observational studies and nutrient amendment experiments were conducted to better understand the nutrient and phytoplankton dynamics of the Hunter River estuary. Eutrophic conditions above ANZECC guidelines for estuaries dominate the Hunter River estuary. The upper Hunter estuary, upstream of its confluence with the Williams River, had the highest concentrations of nutrients and chlorophyll a. [...]
Anticipatory responses to drought by plants: What are the environmental cues?
Published: 2021-09-29
Subjects: Agriculture, Ecology and Evolutionary Biology, Engineering, Environmental Sciences, Life Sciences, Other Physical Sciences and Mathematics, Physical Sciences and Mathematics, Plant Sciences, Water Resource Management
This study is an attempt to reconcile the physics-driven variation in reference evapotranspiration (ET0) and possible sensory-driven anticipatory acclimation that contributes to tolerance of dry weather spells and drought by plants growing in open fields. We use an original data set measured at high temporal resolution. These data include the standard meteorological observations plus detailed [...]
Emerging opportunities for wildlife with sustainable autonomous transportation
Published: 2021-09-29
Subjects: Ecology and Evolutionary Biology, Environmental Sciences, Life Sciences, Natural Resources and Conservation, Physical Sciences and Mathematics, Sustainability
Autonomous vehicles (AV) are expected to play a key role in the future of transportation, and to introduce a disruptive yet potentially beneficial change for wildlife-vehicle interactions. How-ever, this assumption has not been critically examined, and reducing the number of wildlife-vehicle collisions (WVCs) may be beyond current technological capabilities. Here, we introduce a new conceptual [...]
Niche evolution and phylogenetic community paleoecology of Late Ordovician crinoids
Published: 2021-09-27
Subjects: Biodiversity, Earth Sciences, Ecology and Evolutionary Biology, Life Sciences, Paleobiology, Paleontology, Physical Sciences and Mathematics
Fossil crinoids are exceptionally suited to deep-time studies of community paleoecology and niche partitioning. By merging ecomorphological trait and phylogenetic data, this study summarizes niche occupation and community paleoecology of crinoids from the Bromide fauna of Oklahoma (Sandbian, Upper Ordovician). Further, patterns of community structure and niche evolution are evaluated over a ~5 [...]
Drivers of the live pet trade: the role of species traits, socioeconomic attributes and regulatory systems
Published: 2021-08-27
Subjects: Environmental Sciences, Natural Resources and Conservation, Physical Sciences and Mathematics
The live pet trade is a major driver of both biodiversity loss and the introduction of invasive alien species. Building a comprehensive understanding of the pet trade would improve prediction of conservation and biosecurity threats, with the aim to prevent further negative impacts. We used South Australia’s native wildlife permit reporting system as a data-rich example of a live vertebrate pet [...]