Preprints
Filtering by Subject: Ecology and Evolutionary Biology
Temperate-tropical transitions are linked with shifts in the structure of evolutionary integration in Vitaceae leaves
Published: 2022-11-01
Subjects: Ecology and Evolutionary Biology, Life Sciences
Understanding how the intrinsic ability of populations and species to meet shifting selective demands shapes evolutionary patterns over both short and long timescales is a major question in biology. One major axis of evolutionary flexibility can be measured by phenotypic integration and modularity. The strength, scale, and structure of integration may constrain or catalyze evolution in the face [...]
Behavioral plasticity allows ungulates to balance risk and reward following megafire
Published: 2022-10-29
Subjects: Ecology and Evolutionary Biology
Anthropogenic climate and land use change has accelerated the frequency of extreme climatic disturbances such as megafire. These megafires dramatically alter ecosystems and threaten the long-term conservation of economically and ecologically important species, including native ungulates. Recent work suggests that ungulate species may be able to adjust to the immediate effects of megafire by [...]
A globally integrated structure of taxonomy supporting biodiversity science and conservation
Published: 2022-10-28
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences
All aspects of biodiversity research, from taxonomy to conservation, rely on data associated with species names. Effective integration of names across multiple fields is paramount and depends on coordination and organization of taxonomic data. We assess current efforts and find that even key applications for well-studied taxa still lack commonality in taxonomic information required for [...]
Beyond genes-for-behaviour: the potential for genomics to resolve questions in avian brood parasitism
Published: 2022-10-27
Subjects: Ecology and Evolutionary Biology, Genetics and Genomics, Life Sciences
Brood parasite-host interactions are among the most easily observable and amenable natural laboratories of antagonistic coevolution, and as such have intrigued evolutionary biologists for decades. It is therefore surprising they have not been at the forefront of genomic studies on evolutionary adaptation. Here we review state-of-the-art molecular methods in studying avian brood parasitism, a [...]
Deep reticulation: the long legacy of hybridization in vascular plant evolution
Published: 2022-10-26
Subjects: Biodiversity, Botany, Ecology and Evolutionary Biology, Evolution, Life Sciences, Plant Biology, Plant Sciences
Hybridization has long been recognized as a fundamental evolutionary process in plants, but our understanding of its phylogenetic distribution and biological significance across deep evolutionary scales has been largely obscure—until recently. Over the past decade, genomic and phylogenomic datasets have revealed, perhaps not surprisingly, that hybridization, often associated with polyploidy, has [...]
Discovering the rules of plant biogeography using a trait-based approach
Published: 2022-09-30
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences
Lineage-specific traits determine how plants interact with their surrounding environment. As different species may find similar phenotypic solutions through evolution to tolerate, persist in and invade environments with certain characteristics, some traits may become more common in certain types of habitats. These general patterns of geographical trait distribution point towards the existence of [...]
The March of the Human Footprint
Published: 2022-09-29
Subjects: Arts and Humanities, Ecology and Evolutionary Biology, Environmental Indicators and Impact Assessment, Environmental Monitoring, Environmental Sciences, Geography, Human Geography, Life Sciences, Nature and Society Relations, Other Ecology and Evolutionary Biology, Physical Sciences and Mathematics, Remote Sensing, Social and Behavioral Sciences, Spatial Science, Terrestrial and Aquatic Ecology
Human influence is driving planetary change, often in undesirable and unsustainable ways. Recent advances enabled us to measure changes in humanity’s footprint on Earth annually from 2000 – 2019 with a nine-fold improvement in spatial resolution over previous efforts. We found that earlier studies seriously under-estimated the magnitude, extent, and rate of change in the human footprint. [...]
Invasion dynamics of quagga mussels (Dreissena rostriformis bugensis) within a reservoir and its spatially intermittent watershed: Lake Piru and the Santa Clara River, California, USA
Published: 2022-09-29
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology, Terrestrial and Aquatic Ecology
Since its discovery in Lake Mead in 2007, the invasive quagga mussel (Dreissena rostriformis bugensis) has rapidly spread throughout the lower Colorado River drainage. However, the invasion in California remained confined to the Colorado and water systems throughout southern California that receive water from the Colorado River until December 2013, when quagga mussels were first observed in Lake [...]
Best practices in designing, sequencing and identifying random DNA barcodes
Published: 2022-09-28
Subjects: Bioinformatics, Biotechnology, Cell and Developmental Biology, Ecology and Evolutionary Biology, Evolution, Life Sciences
Random DNA barcodes are a versatile tool for tracking cell lineages, with applications ranging from development to cancer to evolution. Here we review and critically evaluate barcode designs as well as methods of barcode sequencing and initial processing of barcode data. We first demonstrate how various barcode design decisions affect data quality and propose a new optimal design that balances [...]
Individual-based eco-evolutionary framework: towards unifying ecology and evolution
Published: 2022-09-28
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences
Evolution is increasingly found to be rapid and entangled with ecological processes in complex eco-evolutionary dynamics, calling for a common conceptual framework. Yet, ecological and evolutionary theory remain largely separated, which constrains the development of integrative research. To overcome this separation, I argue for treating the entangled dynamics as a single eco-evolutionary process [...]
Stable laws in a changing world The structure of evolutionary theories over the centuries
Published: 2022-09-27
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
Successful fundamental theories are built on verifiable principles that include measurable variables. This paper shows that Darwin’s inclusive theory is built on such principles and follows their rocky road into modern operational theories. Besides reproduction, variation, and heredity, Darwin’s conditions of diversification also include the potential for exponential (geometric) population growth [...]
Using integrated multispecies occupancy models to map co-occurrence between bottlenose dolphins and fisheries in the Gulf of Lion, French Mediterranean Sea
Published: 2022-09-27
Subjects: Ecology and Evolutionary Biology, Life Sciences, Population Biology
In the Mediterranean Sea, interactions between marine species and human activities are prevalent. The coastal distribution of bottlenose dolphins (Tursiops truncatus) and the predation pressure they put on fishing stocks lead to regular interactions with fisheries. Multispecies occupancy models are a relevant framework to estimate co-occurrence between two (or more) species while accounting for [...]
Evaluation of DNA Extracted from Timber Rattlesnake (Cotalus horridus) Cloacal and Blood Swabs for Microsatellite Genotyping
Published: 2022-09-26
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology, Terrestrial and Aquatic Ecology
Genetic research is a key component to modern wildlife conservation, but it is contingent on the collection of reliable and high-quality genetic samples. Invasive genetic sampling techniques have potential to negatively impact individuals, which may be prohibitive when working with threatened and endangered species. Prior to sample collection, project managers must try to balance the negative [...]
Open access research infrastructures are critical for sustained citizen science growth: a case study of Australia’s national biodiversity platform, the Atlas of Living Australia (ALA)
Published: 2022-09-23
Subjects: Ecology and Evolutionary Biology, Life Sciences
Citizen science continues to make a substantial contribution to a wide variety of scientific disciplines by allowing the public to be involved in activities like idea generation, study design, data collection and analysis. Although the pace of citizen science has exploded in recent decades, there remains untapped potential for scientific output through investment in research infrastructure that [...]
Individual identity information persists in learned calls of introduced parrot populations
Published: 2022-09-23
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Life Sciences
Animals can actively encode different types of identity information in learned communication signals, such as group membership or individual identity. The social environments in which animals interact may favor different types of information, but whether identity information conveyed in learned signals is resilient or responsive to social disruption over short evolutionary timescales is not well [...]