Preprints
Filtering by Subject: Life Sciences
Bayesian Estimation of Cooccurrence Affinity with Dyadic Regression
Published: 2024-01-23
Subjects: Life Sciences
Estimating underlying cooccurrence relationships between pairs of species has long been a challenging task in ecology as the extent to which species actually cooccur is partially dependent on their prevalences. While recent work has taken large steps towards solving this problem, the next question is how to assess the factors that influence cooccurrence. Here I show that a recently proposed [...]
Distribution, Abundance and Status of At-Risk Birds at a Six-Acre Site Within the Upper Boileau Biodiversity Reserve, Québec: A Year-Long Research Study
Published: 2024-01-22
Subjects: Biodiversity, Life Sciences, Ornithology, Terrestrial and Aquatic Ecology
Understanding the distribution, abundance and status of at-risk birds in any area where human impact is low is an imperative in understanding the larger ecological situation. Birds have been widely seen as reliable indicators of ecological health and there have been significant population declines in North America, especially among migratory aerial insectivores, and are escalading rapidly. As a [...]
Conjugation Related Costs Have Reduced Impact on *in silico* Plasmid Persistence
Published: 2024-01-22
Subjects: Life Sciences
Due to the important role they play in the antimicrobial resistance (AMR) crisis and in microbial evolution in general, a great deal of empirical and theoretical work is currently underway, trying to understand plasmid ecology. One of the key questions is how these often costly genetic elements persist in host populations. Here I show that when modelling plasmid population dynamics, it is not [...]
Evidence to inform spatial management of a western Pacific Ocean tuna purse seine fishery
Published: 2024-01-22
Subjects: Ecology and Evolutionary Biology, Life Sciences, Marine Biology
Fisheries can have profound impacts on co-occurring species exposed to incidental capture, particularly those with life history traits that make them vulnerable to elevated mortality levels. Fisheries spatial management holds substantial potential to balance socioeconomic benefits and costs to threatened bycatch species. This study analyzed observer program data for a western Pacific Ocean tuna [...]
Evolutionary outcomes arising from bistability in ecosystem dynamics
Published: 2024-01-22
Subjects: Life Sciences
While it is known that shallow lakes ecosystems may experience abrupt shifts (ie tipping points) from one state to a contrasting degraded alternative state as a result of gradual environmental changes, the role of evolutionary processes and the impact of trait variation in this context remain largely unexplored. It is crucial to elucidate how eco-evolutionary feedbacks affect abrupt ecological [...]
Food web trophic control modulates tropical Atlantic reef ecosystems response to marine heat wave intensity and duration
Published: 2024-01-22
Subjects: Life Sciences
1. Marine Heat Waves (MHWs) are episodes of anomalous warming in the ocean that can last from a few days to months. MHWs have different characteristics in terms of intensity, duration, and frequency and generate thermal stress on marine ecosystems. In reef ecosystems, they are one of the main causes of decreased presence and abundance of corals, invertebrates, and fish. The deleterious capacity [...]
Non-linearity and temporal variability are overlooked components of global population dynamics
Published: 2024-01-22
Subjects: Life Sciences
Aim. Population dynamics are usually assessed through linear trend analysis, quantifying their general direction. However, linear trends may hide substantial variations in population dynamics that could reconcile apparent discrepancies when quantifying the extent of the biodiversity crisis. We seek to determine whether the use of non-linear methods and [...]
A photographic guide for determining egg incubation stage in the Superb Fairy-wren (Malurus cyaneus)
Published: 2024-01-18
Subjects: Life Sciences
When monitoring the nesting biology of wild birds, nests are often found after the eggs have been laid and incubation has commenced. Candling—the use of a bright light to illuminate egg contents—is a useful method for estimating embryo development and incubation stage. This information is used to estimate when incubation started and predict when eggs will hatch. As the focus of several long-term [...]
Use of a communal display area by Rufous Whistlers (Pachycephala rufiventris)
Published: 2024-01-18
Subjects: Life Sciences
Opportunity Begets Opportunity to Drive Macroevolutionary Dynamics of a Diverse Lizard Radiation
Published: 2024-01-18
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences
Evolution proceeds unevenly across the tree of life, with some lineages accumulating diversity more rapidly than others. Explaining this disparity is challenging as similar evolutionary triggers often do not result in analogous shifts across the tree, and similar shifts may reflect different evolutionary triggers. We used a combination of approaches to directly consider such context-dependency [...]
neonPlantEcology: an R package for preparing NEON plant data for use in ecological research
Published: 2024-01-17
Subjects: Ecology and Evolutionary Biology, Life Sciences
The National Ecological Observatory Network (NEON) is a continental-scale endeavor of ecological data collection for 30 years. We created a software package, neonPlantEcology that automatically arranges the raw data from the plant presence and percent cover (DP1.10058.001) data product from NEON into tables familiar to plant ecologists. Because of the broad scale of the observatory, it is [...]
Opportunities and challenges in applying AI to evolutionary morphology
Published: 2024-01-16
Subjects: Life Sciences
Artificial intelligence (AI) is poised to revolutionise many aspects of science, including the study of evolutionary morphology. While classical AI methods such as principal component analysis and cluster analysis have been commonplace in the study of evolutionary morphology for decades, recent years have seen increasing application of deep learning to ecology and evolutionary biology. As [...]
Asteraceae in isolation: diversity and island biogeography of the largest plant family
Published: 2024-01-16
Subjects: Ecology and Evolutionary Biology, Life Sciences
The hyperdiverse plant family Asteraceae, with over 32,000 species globally, forms an iconic component of island floras, including many spectacular radiations, but a global picture of their insular diversity is lacking. Here, we uncover the global biogeographical and evolutionary patterns of Asteraceae on islands to reveal the magnitude and potential causes of their evolutionary success. We [...]
A big data and machine learning approach for monitoring the condition of ecosystems
Published: 2024-01-16
Subjects: Applied Statistics, Biodiversity, Bioinformatics, Earth Sciences, Ecology and Evolutionary Biology, Environmental Sciences, Forest Biology, Forest Sciences, Life Sciences, Other Ecology and Evolutionary Biology, Physical Sciences and Mathematics, Statistical Methodology, Statistical Models, Terrestrial and Aquatic Ecology
Ecosystems are highly valuable as a source of goods and services and as a heritage for future generations. Knowing their condition is extremely important for all management and conservation activities and public policies. Until now, the evaluation of ecosystem condition has been unsatisfactory and thus lacks practical implementation for most countries. We propose that ecosystem integrity is a [...]
The cytoarchitecture of the telencephalon of Labroides dimidiatus (Labridae)
Published: 2024-01-15
Subjects: Life Sciences
As evidence for advanced cognitive abilities in fishes steadily increases, cytoarchitectonic studies of the Actinopterygian telencephalon receive increasing interest by neuro-ethologists. However, the amount of information concerning brain organization in this group is still rather small. Here, we present a cytoarchitectonic analysis of the telencephalon of Labroides dimidiatus, a species showing [...]