Preprints
Filtering by Subject: Life Sciences
Improving species conservation plans under IUCN’s One Plan Approach using quantitative genetic methods
Published: 2022-02-19
Subjects: Ecology and Evolutionary Biology, Genetics, Genetics and Genomics, Life Sciences
Human activities are resulting in altered environmental conditions that are impacting the demography and evolution of species globally. If we wish to prevent anthropogenic extinction and extirpation, we need to improve our ability to restore wild populations. Ex situ populations can be an important tool for species conservation. However, it is difficult to prevent deviations from an optimal [...]
Graph embedding and transfer learning can help predict potential species interaction networks despite data limitations
Published: 2022-02-19
Subjects: Biodiversity, Life Sciences
Metawebs (networks of potential interactions within a species pool) are a powerful abstraction to understand how large-scale species interaction networks are structured. Because metawebs are typically expressed at large spatial and taxonomic scales, assembling them is a tedious and costly process; predictive methods can help circumvent the limitations in data deficiencies, by providing a first [...]
Past and future uses of text mining in ecology & evolution
Published: 2022-02-16
Subjects: Biodiversity, Bioinformatics, Ecology and Evolutionary Biology, Life Sciences
Ecology and evolutionary biology, like other scientific fields, are experiencing an exponential growth of academic manuscripts. As domain knowledge accumulates, scientists will need new computational approaches for identifying relevant literature to read and include in formal literature reviews and meta-analyses. Importantly, these approaches can also facilitate automated, large-scale data [...]
Density dependence and disease dynamics: moving towards a predictive framework
Published: 2022-02-16
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
High population density is thought to exacerbate parasite exposure rates, leading to increased transmission and greater disease burdens. Different types of interactions exhibit different relationships with density, and therefore so do parasites that are spread by these interactions. Epidemiological models often assume a given density-transmission relationship, and the validity of this assumption [...]
Behavioural ecology at the spatial-social interface
Published: 2022-02-11
Subjects: Biology, Integrative Biology, Life Sciences
Spatial and social behaviour are fundamental aspects of an animal’s biology, and the social and spatial environments are indelibly linked through mutual causes and shared consequences. Behavioural variation at the “spatial-social interface”, which we define as the intersection of social and spatial aspects of individuals’ phenotypes and environments, has implications for ecological and [...]
Integrated distribution modelling to estimate the national population size of an alpine bird
Published: 2022-02-07
Subjects: Biodiversity, Life Sciences
1) Estimates of species’ population abundances have important ramifications for conservation decision-making. Conservation practice, however, often has to rely on indices of relative abundance rather than absolute estimates. Attempts to estimate large-scale abundance estimates of species are limited by both the availability of data and statistical challenges. New opportunities are, however, [...]
Intergenerational effects of overfeeding on aversive learning in zebrafish (Danio rerio)
Published: 2022-02-07
Subjects: Animal Experimentation and Research, Behavior and Ethology, Ecology and Evolutionary Biology, Life Sciences, Research Methods in Life Sciences
The obesity epidemic is among the most serious and rapidly growing public health challenges of the 21st century. This rapid increase is concerning as obesity appears to negatively impact cognition and behaviour. Furthermore, some studies suggest that this negative effect could be carried across generations from both mothers and fathers although evidence is not consistent. Here, we attempt to [...]
The effects of an obesogenic diet on behaviour and cognition in zebrafish (Danio rerio): traits average, variability, repeatability, and behavioural syndromes
Published: 2022-02-07
Subjects: Animal Experimentation and Research, Behavior and Ethology, Ecology and Evolutionary Biology, Life Sciences, Research Methods in Life Sciences
The obesity epidemic, largely driven by the accessibility of ultra-processed high-energy foods, is one of the most pressing public health challenges of the 21st century. Consequently, there is increasing concern about the impacts of diet-induced obesity on behaviour and cognition. While research on this matter continues, to date, no study has explicitly investigated the effect of obesogenic diet [...]
Mismatch between IUCN range maps and species interactions data illustrated using the Serengeti food web
Published: 2022-02-06
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology, Terrestrial and Aquatic Ecology
Background. Range maps are a useful tool to describe the spatial distribution of species. However, they need to be used with caution, as they essentially represent a rough approximation of a species’ suitable habitats. When stacked together, the resulting communities in each grid cell may not always be realistic, especially when species interactions are taken into account. Here we show the extent [...]
Origins and evolution of biological novelty
Published: 2022-02-06
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Understanding the origins and impacts of novel traits has been a perennial interest in many realms of ecology and evolutionary biology. Here, we build on previous evolutionary and philosophical treatments of the subject to encompass novelties across biological scales and eco-evolutionary perspectives. By defining novelties as new features at one biological scale that have emergent effects at [...]
101 years of biofluorescent animal studies: trends in literature, novel hypotheses, and best practices moving forward
Published: 2022-02-06
Subjects: Animal Sciences, Bioinformatics, Life Sciences
Biofluorescent animals have become a recent trend in natural history publishing. While the functions and origins of biofluorescence in fauna remains somewhat controversial, trends in biofluorescence throughout published literature may elucidate these concepts. Here we review 101 years of biofluorescent studies encompassing 108 published papers and 977 unique species records. Our results provide [...]
A set of principles and practical suggestions for equitable fieldwork in biology
Published: 2022-02-04
Subjects: Biodiversity, Ecology and Evolutionary Biology, Entomology, Forest Sciences, Genetics and Genomics, Life Sciences, Marine Biology, Plant Sciences
Field biology is an area of research that involves working directly with living organisms in situ through a practice known as “fieldwork.” Conducting fieldwork often requires complex logistical planning within multiregional or multinational teams, interacting with local communities at field sites, and collaborative research led by one or a few of the core team members. However, existing power [...]
Foraging complexity and the evolution of childhood
Published: 2022-02-04
Subjects: Life Sciences, Other Life Sciences
Our species’ long childhood is hypothesized to have evolved as a period for learning complex foraging skills. Researchers studying the development of foraging proficiency have focused on assessing this hypothesis, yet studies present inconsistent conclusions regarding the connection between foraging skill development and niche complexity. In this paper, we leverage published records of child [...]
The costs of abating threats to Australias biodiversity
Published: 2022-02-04
Subjects: Biology, Ecology and Evolutionary Biology, Environmental Sciences, Life Sciences, Natural Resources Management and Policy, Physical Sciences and Mathematics
1. Budgeting for biodiversity conservation requires realistic estimates of the costs of threat abatement. However, data on the costs of managing threats to biodiversity is often unavailable or unable to be extrapolated across relevant locations and scales due to a lack of transparency and consistency in how it was collated. Conservation expenditure largely occurs without a priori estimates costs [...]
A low-cost solution for documenting, tracking, and verifying cage-level animal husbandry tasks using wireless QR scanners and cloud-based spreadsheets
Published: 2022-02-04
Subjects: Animal Sciences, Animal Studies, Biology, Life Sciences, Social and Behavioral Sciences
Animal care is a critical component underlying successful behavioral and cognition experiments. Technological solutions for documentation and verification of care can aid in monitoring that activities are completed according to standard operating procedures and ensure that no individuals are overlooked. Here, I summarize a low-cost, flexible, and easy to use system that I developed to document [...]