Preprints
Filtering by Subject: Life Sciences
Source and seasonality of epizootic mycoplasmosis in free-ranging pronghorn (Antilocapra americana)
Published: 2021-12-20
Subjects: Ecology and Evolutionary Biology, Life Sciences, Medicine and Health Sciences, Microbiology, Other Ecology and Evolutionary Biology, Pathogenic Microbiology, Veterinary Infectious Diseases, Veterinary Medicine
Mycoplasma bovis is an economically important bacterial pathogen of cattle and bison that most commonly causes pneumonia, polyarthritis and mastitis. M. bovis is prevalent in cattle and commercial bison; however, infections in other species are rare. In early 2019, we identified M. bovis in free-ranging pronghorn (Antilocapra americana) in northeastern Wyoming, USA. Here we report on additional [...]
LONG-TERM MONITORING OF THE EUROPEAN ROLLER (CORACIAS GARRULUS) IN UKRAINE: IS CLIMATE BEHIND THE CHANGES?
Published: 2021-12-20
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
Since the 1980s there has been a long-term decline in numbers and contraction of range in Europe, including Ukraine. Our specific goals were to reconstruct the climatically suitable range of the species in Ukraine before the 1980s, gain better knowledge on its requirements, compare the past and current suitable areas, infer the regional and environmental variables that best explain its [...]
The evolutionary impacts of synonymous mutations
Published: 2021-12-20
Subjects: Ecology and Evolutionary Biology, Evolution, Genetics and Genomics, Life Sciences, Molecular Genetics
During the 50 years since the genetic code was cracked, our understanding of the evolutionary consequences of synonymous mutations has undergone a dramatic shift. Synonymous codon changes were initially considered selectively neutral, and as such, exemplars of evolution via genetic drift. However, the pervasive and non-negligible fitness impacts of synonymous mutations are now clear across [...]
Ecology and the Evolution of Sex Chromosomes
Published: 2021-12-18
Subjects: Ecology and Evolutionary Biology, Evolution, Genetics and Genomics, Life Sciences
This article reviews and discusses ecological factors that affect sex chromosome evolution. Sex chromosomes are common features of animal genomes, and are often the location where master sex determination genes are found. Many important aspects of sex chromosome evolution are thought to be driven by sex-specific selection pressures, such as sexual antagonism and sexual selection. Sex-specific [...]
Not so ancient: Misclassification of alpine plants biases the dating of the evolution of alpine biota in the Himalaya-Tibet Orogen
Published: 2021-12-17
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Ding et al. (Science 2020) proposed that the extant lineages of the alpine flora of the Tibet Himalaya Hengduan region emerged by the early Oligocene. We argue that these results are based on misclassifying high montane taxa as alpine and that their data support alpine habitats only at about 7.5 mio years before present.
State of the Amphibia 2020: A review of five years of amphibian research and existing resources
Published: 2021-12-15
Subjects: Biology, Life Sciences
Amphibians are a clade of over 8,400 species that provide unique research opportunities and challenges. With amphibians undergoing severe global declines, we posit that assessing our current understanding of amphibians is imperative. Focusing on the past five years (2016–2020), we examine trends in amphibian research, data, and systematics. New species of amphibians continue to be described at a [...]
Genome sequence for the blue-flowered Andean shrub Iochroma cyaneum reveals extensive discordance across the berry clade of Solanaceae
Published: 2021-12-15
Subjects: Ecology and Evolutionary Biology, Evolution, Genetics and Genomics, Genomics, Life Sciences
The tomato family, Solanaceae, is a model clade for a wide range of applied and basic research questions. Currently, reference-quality genomes are available for over 30 species from seven genera, and these include numerous crops as well as wild species (e.g., Jaltomata sinuosa and Nicotiana attenuata). Here we present the genome of the showy-flowered Andean shrub Iochroma cyaneum, a woody lineage [...]
Reconciliation of evidence for the Portulacineae “backbone” phylogeny
Published: 2021-12-14
Subjects: Biodiversity, Life Sciences
Portulacineae comprise a clade of eight ostensibly monophyletic families, four of which (Anacampserotaceae, Montiaceae, Portulacaceae s. str., and Talinaceae) and part of a fifth (Didiereaceae) had been classified traditionally in Portulacaceae s. lato. The clade also includes Basellaceae, Cactaceae, and Halophytaceae. While available evidence strongly supports recognition of major clades within [...]
Identifying cryptic fern gametophytes using DNA barcoding: A review
Published: 2021-12-14
Subjects: Biology, Ecology and Evolutionary Biology, Genetics and Genomics, Life Sciences, Plant Sciences
Ferns and lycophytes are unique among land plants for having sporophyte (diploid) and gametophyte (haploid) generations that can grow independently of each other. While most studies of fern ecology focus on the more obvious sporophytic stage, the gametophyte is critically important, as it is the sexual phase of the life cycle. Yet, fern gametophytes have long been neglected in field studies due [...]
Global birdwatching data reveal uneven consequences of the COVID-19 pandemic
Published: 2021-12-09
Subjects: Biodiversity, Life Sciences
Birdwatching is a global phenomenon involving many thousands of people. Citizen science generates data providing insights into global patterns of bird distribution across space and time, yet how the pandemic may cast a longer shadow remains unassessed. Here, we explore whether pandemic restrictions influenced observations globally from 2020-May 2021, considering also GDPc and tourism income. We [...]
Multiple anthropogenic stressors have inconsistent cumulative effects across a large spatial gradient
Published: 2021-12-08
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology, Terrestrial and Aquatic Ecology
Biodiversity is declining, typically because of multiple anthropogenic stressors. Cumulative effects of multiple stressors are classified as additive, when cumulative effects are as expected from the stressor’s singular effects, synergistic when greater than additive or antagonistic when less than additive. Less attention has been given to the consistency of cumulative effects. We analysed stream [...]
Direct Economic Inputs from Internationally Funded Science Projects to the Abaco Islands, The Bahamas
Published: 2021-12-06
Subjects: Communication, Environmental Studies, International and Intercultural Communication, Life Sciences, Other Life Sciences, Social and Behavioral Sciences
International expenditures for scientific research are important for small island developing nations, especially for those local communities that directly support research activities. We used the Abaco Islands, The Bahamas, as a case study to quantify the direct monetary inputs to a local economy via internationally-funded scientific research. We found that over two years the external monetary [...]
Selfish, promiscuous, and sometimes useful: how mobile genetic elements drive horizontal gene transfer in microbial populations
Published: 2021-12-04
Subjects: Ecology and Evolutionary Biology, Evolution, Genetics and Genomics, Genomics, Life Sciences, Microbiology, Other Microbiology
Horizontal gene transfer (HGT) drives microbial adaptation but is often under the control of mobile genetic elements (MGEs) whose interests are not necessarily aligned with those of their hosts. In general, transfer is costly to the donor cell while potentially beneficial to the recipients. The diversity and plasticity of cell-MGEs interactions, and those among MGEs, results in complex [...]
Bothersome burrowers: tracking gopher (Thomomys bottae) time-averaging in a late-Holocene site in California
Published: 2021-12-04
Subjects: Biology, Integrative Biology, Life Sciences
Understanding the taphonomic biases affecting fossil deposits is necessary in order to extract their true ecological signals. In terrestrial sites, the mixing of fossil material by mammalian bioturbators can substantially increase time-averaging, obscuring or even erasing stratification. In particular, pocket gophers (Thomomys sp.) are known to burrow in Holocene sites and thereby complicate the [...]
Mitochondria as the powerhouses of sexual selection: testing mechanistic links between development, cellular respiration, and bird song
Published: 2021-12-03
Subjects: Biology, Integrative Biology, Life Sciences
Although the influence of developmental conditions on the expression of sexually selected traits is established, the physiological mechanisms that modulate such effects remain a matter of intense debate. Here, we test the role of the developmental environment in shaping adult mitochondrial function and link mitochondrial function to expression of a sexually selected trait in males (bird song). We [...]