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Preprints

There are 2700 Preprints listed.

Measuring natural selection on the transcriptome

John R Stinchcombe, John K. Kelly

Published: 2025-03-11
Subjects: Ecology and Evolutionary Biology, Evolution, Other Genetics and Genomics

The level and pattern of gene expression is increasingly recognized as a principal determinant of plant phenotypes and thus of fitness. The estimation of natural selection on the transcriptome is an emerging research discipline. We here review recent progress and consider the challenges posed by the high dimensionality of the transcriptome for the multiple regression methods routinely used to [...]

Socioecology and the role of scramble competition

Andreas Berghänel, Sarah Marshall, Friederike Range

Published: 2025-03-11
Subjects: Animal Sciences, Animal Studies, Anthropology, Behavior and Ethology, Biological and Physical Anthropology, Biology, Ecology and Evolutionary Biology, Evolution, Life Sciences, Zoology

Ecological explanations for social organization and behavior are central to behavioral ecology. Unfortunately, the continuing mismatch between theoretical predictions and some empirical data led to increasingly complex hypotheses with numerous factors, raising doubts about their predictive value or even falsifiability. Moreover, several taxon-specific socioecological hypotheses have been [...]

Mystery of the disappearing dogfish: transboundary analyses reveal steep population declines across the Northeast Pacific with little evidence for regional redistribution

Lindsay N.K. Davidson, Philina A. English, Jacquelynne R. King, et al.

Published: 2025-03-11
Subjects: Aquaculture and Fisheries Life Sciences, Natural Resources Management and Policy, Population Biology

Quantifying broad-scale population trends and distribution change is critical for effective management and conservation of marine species, particularly under climate change. However, fragmented regional survey data often hinder such efforts for transboundary populations. A prime example is Pacific Spiny Dogfish (Squalus suckleyi, Squalidae), a small shark with a remarkably slow life history and [...]

Historical legacies of spatial and temporal climate exposure on thermal physiology shape butterfly vulnerability to recent climate change

Sarah E Diamond, Carmen da Silva

Published: 2025-03-11
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences

Few observations are more indelible in ecology than widespread variation in the spatial and temporal occurrence of species. Although the mechanistic underpinnings of such variation are likely multifarious, temperature is argued to be a key driver. Understanding how temperature shapes species ranges and seasonal activity not only provides insights into historical biogeographic patterns, but also [...]

Which web to invade? Argyrodine kleptoparasites differentiate among architecturally different host webs

Ingi Agnarsson, Fi-Niaina Ramahefarisonc, Heiða Hlín Matthíasdóttir, et al.

Published: 2025-03-10
Subjects: Life Sciences

Kleptoparasitism, the theft of resources from another organism, is a survival strategy found across the animal kingdom. Many argyrodinae cobweb spiders (Theridiidae) are obligatory kleptoparasites that have largely abandoned web building, relying instead on webs of larger hosts. Theory predicts, and limited prior research indicates, that kleptoparasites are not randomly distributed among host [...]

The emerging need to manage scavenged wildlife resources

Samantha M.L. Maher, Tyler Kjorstad, Kailin Kroetz, et al.

Published: 2025-03-10
Subjects: Biodiversity

Scavenged wildlife resources are a unique type of common pool wildlife resource that are collected without killing or capturing the animal, and their collection is understudied and potentially underregulated relative to their conservation significance. The separability of these resources from the living population of animals that produce them can complicate efforts to link collection to future [...]

Minimal viable sound systems for language evolution

Adriano R Lameira, Steven Moran

Published: 2025-03-10
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences, Neuroscience and Neurobiology, Physiology, Systems Biology

Human vocal gamut covers 3000 unique speech sounds comprising the world’s languages, with each new speaker having to learn the sounds of its new language. Since large, expandable repertoires are facilitated by vocal learning, this capacity has long been considered a prerequisite for speech and language evolution. The postulation of a vocal learning and repertoire size ceiling has, however, never [...]

Grazer-induced bioluminescence and toxicity in marine dinoflagellates

Paula Gonzalo-Valmala, Milad Pourdanandeh, Sandra Lage, et al.

Published: 2025-03-10
Subjects: Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Marine Biology, Plant Biology

Marine copepods are the most abundant type of multicellular zooplankton in the global oceans. They imprint their surrounding waters with a unique bouquet of polar lipids; copepodamides. Copepodamides are recognized by prey organisms, who respond by inducing defensive traits including bioluminescence, toxin production, colony size plasticity and structural modifications. Copepodamides are [...]

Advancing Amazonian botanical knowledge: a detailed ecological characterization of an open ombrophile forest, southwest Amazonian Brazil

Bruno Umbelino, Juliana Stropp, Ingrid Mendes-Silva, et al.

Published: 2025-03-10
Subjects: Life Sciences

Biodiversity inventories present excellent opportunities for ecological investigations and the classification of different threats to the community, nonetheless these applications are not frequently employed. Our main objective was to determine the tree and palm community within a one-hectare areas, also exploring the association between functional attributes and the projected threat of category [...]

A novel method to estimate actual infrastructure-induced mortality by integrating sampling biases

Guillermo Gómez Peña, Marcello D'Amico, Carlos Rodríguez, et al.

Published: 2025-03-10
Subjects: Life Sciences

1. Human infrastructures are among the most impactful threads to wildlife. While estimates exist on the number of animals killed by these structures over a given period, such estimates typically do no account for several detection biases. Consequently, true mortality rates may be severely underestimated, as well as their impact on populations and species. 2. We present a hierarchical Bayesian [...]

Pattern-informed energetics: Energy allocation modeling for predicting trait variation and population persistence

Cara A. Gallagher, Viktoriia Radchuk, Melanie Dammhahn, et al.

Published: 2025-03-07
Subjects: Ecology and Evolutionary Biology, Life Sciences, Physiology

Energetics drive emergent ecosystem processes, shaping behavior and population dynamics in response to environmental conditions. While energy budget models can be used to effectively link resource dynamics to fitness outcomes, they often lack empirical grounding for energy allocation under resource constraints.  Here, we introduce the Pattern-Informed Energetics (PIE) framework, which [...]

Modelling the distribution of the tick Ixodes ricinus in England and Wales using passive surveillance data from citizen science reports

Mark Gideon Burdon, Maximilian Ayling, Nyall Jamieson, et al.

Published: 2025-03-07
Subjects: Ecology and Evolutionary Biology, Entomology, Environmental Public Health, Public Health

Background: The tick Ixodes ricinus is the most common tick species in the UK and a significant vector of Borrelia burgdorferi s.l. (causative agent of Lyme borreliosis) and Tick-Borne Encephalitis virus (TBEv) to humans and Anaplasma phagocutphilum, Babesia divergens and louping ill virus to animals.Methods: The Tick Surveillance Scheme (TSS) administered by the UK Health Security Agency (UKHSA) [...]

AmphiTherm: a comprehensive database of amphibian thermal tolerance and preference

Patrice Pottier, Rachel Rui Ying Oh, Pietro Pollo, et al.

Published: 2025-03-07
Subjects: Ecology and Evolutionary Biology, Life Sciences

Thermal traits are crucial to our understanding of the ecology and physiology of ectothermic animals. While rising global temperatures have increasingly pushed research towards the study of upper thermal limits, lower thermal limits and thermal preferences are essential for defining the thermal niche of ectotherms. Through a systematic review of the literature in seven languages, we expanded an [...]

The Physical and Chemical Basis for Temperature Effects on Metabolic Rate and Biological Processes – A Brief History

Mark Ritchie, Jose Ignacio Arroyo

Published: 2025-03-07
Subjects: Life Sciences

IUCN Red List of Ecosystems, Mangroves of the Java Transitional

Frida Sidik, Dhira Saputra, Yaya Ihya Ulumuddin, et al.

Published: 2025-03-07
Subjects: Life Sciences

Mangroves of the Java Transitional is a regional ecosystem subgroup (level 4 unit of the IUCN Global Ecosystem Typology). It includes the marine ecoregions of Southern Java and Cocos-Keeling/Christmas Island. The Java Transitional mangrove province mapped extent in 2020 was 159.9 km2, representing 0.1% of the global mangrove area. The biota is characterized by 34 species of true mangroves. Java [...]

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