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Preprints

There are 3838 Preprints listed.

Gaussian processes on phylogenies: a kernel framework for building, checking and comparing models of trait evolution

Thomas A Püschel

Published: 2026-10-23
Subjects: Life Sciences

Phylogenetic comparative methods for continuous traits, such as phylogenetic generalised least squares, Brownian motion and Ornstein–Uhlenbeck models, Pagel's tree transformations, early-burst and multi-rate models, phylogenetic mixed models and ancestral-state reconstruction, can all be regarded as Gaussian processes on a phylogeny that differ only in their covariance function, or kernel. This [...]

Conspecific density enhances sound seed production during high-seed years in European beech

Katarzyna Kondrat, Jakub Szymkowiak, Maciej K. Barczyk, et al.

Published: 2026-10-23
Subjects: Life Sciences

Climate change is reducing the supply of sound seeds available for forest regeneration, creating a need to identify management strategies that can counteract these losses. Managing local tree density offers one potential approach, as neighbouring trees can enhance pollination but also increase losses to seed predators. In masting species, which produce highly variable but synchronised seed crops, [...]

Vert-NSM: neural shape models for shape completion, classification, and landmark-free morphometrics of vertebrate specimens

Katherine Aubry Wolcott, Amar Cutura, Matthew Delage, et al.

Published: 2026-10-23
Subjects: Biodiversity

Natural history museums are building digital 3D archives at a scale that enables geometric morphometric analysis across thousands of specimens. Landmark-based analyses depend on anatomical priors and often exclude unidentified and incomplete specimens, which are abundant in collections and the fossil record. Continuous shape representations offer a landmark-free alternative that can be combined [...]

Genetic diversity must underpin area-based conservation and restoration targets

Riina Jalonen, Isabel López Noriega, Stephen Cavers, et al.

Published: 2026-10-23
Subjects: Biodiversity, Environmental Policy, Genetics and Genomics, Life Sciences

The mid-term review of the Kunming-Montreal Global Biodiversity Framework reveals highly uneven progress in halting biodiversity loss, especially for genetic diversity (Target 4) which underpins ecosystem function and species’ adaptive potential in a changing environment (Des Roches et al., 2018). Over 70% of the Parties have set national targets to conserve and restore genetic diversity, yet, so [...]

IUCN Red List of Ecosystems: Coral Reefs of Brazil

Beatrice Padovani-Ferreira, Camila Brasil Loura da Silveira, Jéssica Borba Q.dos Santos, et al.

Published: 2026-10-22
Subjects: Life Sciences

Brazil’s coral reefs are the only true known coral reefs in the South Atlantic and extend across approximately 3,000 km along the coast, from Parcel de Manuel Luís at 0°50’S to Esquecidos reef at 18°50’S. They present unique characteristics, including their distinct growth form, and harbor endemic species of coral, fish and invertebrates, supporting high levels of marine biodiversity. [...]

IUCN Red List of Ecosystems: Coral Reefs of East Asia

Georg Valentin Flückiger, Danwei Huang, Ray Jing Tong, et al.

Published: 2026-10-22
Subjects: Life Sciences

East Asian coral reefs extend from 13.9°S to 31.0°N across 16 countries and territories, covering an estimated 75,765 km² of shallow coral reef habitat, representing 30.3% of the global coral reef extent and encompassing 25 coral reef ecoregions. Of this, 35,620 km² of mapped coral reef was assessed in this study. The region hosts the worldwide highest diversity of corals, invertebrates and fish, [...]

IUCN Red List of Ecosystems: Coral Reefs of ROPME Sea Area

Rita C. Bento, Amal Al-Gargawi, Jenan Al Asfoor, et al.

Published: 2026-10-22
Subjects: Life Sciences

Coral reefs of the ROPME Sea Area (RSA) extend from the Arabian (Persian) Gulf through the Gulf of Oman to the western Arabian Sea, spanning the coastal and offshore waters of Bahrain, Iran, Iraq, Kuwait, Oman, Qatar, Saudi Arabia and the United Arab Emirates. With an area of 632 km2, these coral reefs represent 0.35% of the photic coral reef area assessed globally in the Red List of Ecosystems. [...]

IUCN Red List of Ecosystems: Coral Reefs of South Asia

Min Hein Htike, Swaleh Aboud, Mishal Gudka, et al.

Published: 2026-10-22
Subjects: Life Sciences

South Asian coral reefs extend from approximately 10.80°S to 25.06°N across India, Bangladesh, Sri Lanka, the Maldives and the Chagos Archipelago. They cover an estimated 8,282.6 km², representing approximately 4% of global coral-reef extent, and encompass 13 ecoregions delineated using the Marine Ecoregions of the World framework and regional expert input. The region supports diverse [...]

IUCN Red List of Ecosystems: Coral Reefs of the Caribbean

Jack V. Johnson, Franz Smith, Melanie McField, et al.

Published: 2026-10-22
Subjects: Life Sciences

IUCN Red List of Ecosystems: Coral Reefs of the Red Sea and Gulf of Aden

Maher A. Amer, Swaleh Aboud, Tamer Attalla, et al.

Published: 2026-10-22
Subjects: Life Sciences

The Red Sea and Gulf of Aden constitute a complex and globally significant tropical marine ecosystem characterized and long recognized by exceptional biological diversity and a high degree of endemism. Overall, the region contains an estimated 13,118 km² of coral reefs, representing around 7% of the photic coral reef area assessed globally in the Red List of Ecosystems (5.0% of global coral reef [...]

IUCN Red List of Ecosystems: Coral Reefs of the Eastern Tropical Pacific

Andrea Arriaga-Madrigal, Manuel Olán-González, Juan P. Quimbayo, et al.

Published: 2026-10-22
Subjects: Life Sciences

Coral reefs in the Eastern Tropical Pacific (ETP), covering 140 km² (0.04% of the total global coral reef extent), are under increasing climate and anthropogenic threats. Coral reef development and species distribution in the ETP are conditioned by the characteristic isolation of the region and its strong environmental variability, including El Niño-Southern Oscillation (ENSO) events and [...]

IUCN Red List of Ecosystems: Coral Reefs of the Pacific

Mathilde Maslin, Vania Andreoli, Kristina Heidrich, et al.

Published: 2026-10-22
Subjects: Life Sciences

Coral reefs of the Pacific region extend across approximately 30°N to 30°S, covering roughly 35 500 km2. They range from tropical waters of Papua New Guinea in the West to subtropical latitudes, such as Southeastern Pitcairn or Northern Hawaii borders. This encompasses 21 coral reef ecoregions as defined by the Marine Ecoregions Of the World (MEOW) and Marine and Coastal Biodiversity Management [...]

IUCN Red List of Ecosystems: Coral Reefs of the Western Indian Ocean

Mishal Gudka, Abigail Mwalimu, Karin Moejes, et al.

Published: 2026-10-22
Subjects: Life Sciences

Western Indian Ocean (WIO) coral reefs extend across the East African coastline from Somalia to South Africa, and eastward to include the Îles Éparses and island states of Madagascar, the Comoros, Seychelles and Mauritius, and the French territories of Mayotte and Réunion. The total mapped area of photic coral reef ecosystems is approximately 8090 km², representing approximately 4.5 % of the [...]

From Risk to Application: What Critically Endangered means for the world's coral reefs

Mishal Gudka, David Keith, David Obura, et al.

Published: 2026-10-22
Subjects: Biology, Life Sciences

The first global risk assessment of coral reef ecosystems has found all fully assessed, shallow-water (photic) coral reef ecosystems are at an extremely high risk of ecological collapse in the next 50 years. This Critically Endangered risk assignment under the Red List of Ecosystems (RLE) applies to 122 of the 127 coral reef ecosystems (ecoregions) and was assessed by regional expert teams, [...]

Gene duplications potentiate adaptive evolution of complex traits

Matthew Moreno, Cameron Haynes, Charles Ofria, et al.

Published: 2026-10-22
Subjects: Evolution

Much of extant genetic material is known to have resulted from earlier genetic duplications. On this basis, gene duplications are widely recognized as a key factor in the evolution of organismal complexity --- both in producing novel adaptations (i.e., neofunctionalization) and in accumulating functional specialization (i.e., subfunctionalization). However, across the tree of life, no ready [...]

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