Preprints
Filtering by Subject: Evolution
The brain’s bootstrapping problem and its consequences: Parental provisioning and variation in vertebrate brain sizes
Published: 2022-07-05
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Our understanding of the considerable variation in vertebrate brain size remains incomplete. Large brains are adaptive but brains require unusually high, near-constant energy inputs, and are prioritized energy targets. This trade-off also has understudied developmental consequences: immatures must develop a fully functional brain without already having one. We here propose that energy subsidies [...]
Herodotools: An R package to integrate macroevolution, community ecology, and biogeography
Published: 2022-07-05
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences, Other Ecology and Evolutionary Biology
Aim: Historical processes like speciation, extinction, and historical dispersal are the ultimate factors generating and maintaining biodiversity in space and time. While detecting the effect of those processes on the distribution of biodiversity has great relevance by itself, how to measure them is critical to interpreting the underlying causes of biological patterns. However, metrics of [...]
PHENOTYPIC PLASTICITY MADE SIMPLE, BUT NOT TOO SIMPLE
Published: 2022-06-29
Subjects: Biology, Ecology and Evolutionary Biology, Evolution, Life Sciences
Phenotypic plasticity refers to environment-dependent trait expression (Dewitt and Scheiner, 2004). Knowledge of phenotypic plasticity is important in virtually all areas of basic and applied biology. Researchers in applied fields (such as agriculture, medicine, public health, wildlife management, and conservation biology) have a vested interest in knowing how traits are or will be expressed [...]
A simple conceptual framework and nomenclature for studying repeated, parallel and convergent evolution
Published: 2022-06-28
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Parallel and convergent evolution are textbook examples of the role of natural selection in evolution. However, these terms are used interchangeably, and sometimes with conflicting meanings. This has resulted in confusion, which hampers the understanding of the processes underlying these important forms of evolution. In this synthesis, I discuss the issues with current definitions of parallel, [...]
The effect of experimental hybridization on cognition and brain anatomy: limited phenotypic variation and transgression in Poeciliidae
Published: 2022-06-24
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Evolution, Life Sciences
Hybridization can promote phenotypic variation and often produces trait combinations distinct from the parental species. This increase in available variation can lead to the manifestation of functional novelty when new phenotypes bear adaptive value under the environmental conditions in which they occur. While the role of hybridization as a driver of variation and novelty in traits linked to [...]
The vocal apparatus of bats: an understudied tool to reconstruct the evolutionary history of echolocation?
Published: 2022-06-13
Subjects: Animal Sciences, Biology, Ecology and Evolutionary Biology, Evolution, Life Sciences, Other Ecology and Evolutionary Biology, Zoology
Until recently, bat phylogeny separated megabats (laryngeally non-echolocators) and microbats (all laryngeal echolocators) into two distinct clades. This segregation was consistent with the assumption that laryngeal echolocation was acquired by a common ancestor and inherited by all microchiropterans. Thus, laryngeal echolocation was regarded to have evolved once. Recent advances in bat genome [...]
Micro-evolutionary response of spring migration timing in a wild seabird
Published: 2022-06-07
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Understanding the mechanisms by which populations can adapt to changing environmental conditions is crucial for predicting their viability. In the context of rapid climate change, phenological advance is a key adaptation for which evidence is accumulating across taxa. Among vertebrates, phenotypic plasticity is known to underlie most of this phenological change, while evidence for micro-evolution [...]
EvoPhylo: an R package for pre- and postprocessing of morphological data from relaxed clock Bayesian phylogenetics
Published: 2022-06-06
Subjects: Bioinformatics, Ecology and Evolutionary Biology, Evolution, Life Sciences
1. Relaxed clock Bayesian evolutionary inference (BEI) enables the co-estimation of phylogenetic trees and evolutionary parameters associated with models of character and lineage evolution. Fast advances in new model developments over the past decade have boosted BEI as a major macroevolutionary analytical framework using morphological and/or molecular data across vastly different study systems. [...]
Within-colony segregation of foraging areas: from patterns to processes
Published: 2022-05-18
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Evolution, Life Sciences, Other Ecology and Evolutionary Biology
Spatial segregation of foraging areas among conspecifics breeding in different colonies has been observed in several colonial vertebrates and is assumed to originate from competition and information use. Segregation between sub-groups of foraging animals from the same colony (hereafter sub-colonies) has comparatively received limited attention, even though it may have strong impacts on colony [...]
Patterns of selection across gene regulatory networks
Published: 2022-04-25
Subjects: Cell and Developmental Biology, Ecology and Evolutionary Biology, Evolution, Life Sciences
Gene regulatory networks (GRNs) are the core engine of organismal development. If we would like to understand the origin and diversification of phenotypes, it is necessary to consider the structure of GRNs in order to reconstruct the links between genetic mutations and phenotypic change. Much of the progress in evolutionary developmental biology, however, has occurred without a nuanced [...]
Lessons learned from organizing and teaching virtual phylogenetics workshops
Published: 2022-04-15
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
In 2020 and 2021, the COVID-19 pandemic led to an abrupt overhaul of many academic practices, including the transition of scientific events, such as workshops, to a fully virtual format. We describe our experiences organizing and teaching online-only statistical phylogenetics workshops and the lessons we learned along the way. We found that online workshops present some specific challenges, but [...]
What Determines the Minimum Body Size for Vertebrates?
Published: 2022-04-07
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
The minimum body size of vertebrate species lies just above 6 millimeters, in stark contrast to the minimum sizes attained by species of other major taxonomic groups. This paper presents two connected hypotheses explaining this minimum size obtainable with a vertebrate Bauplan. Firstly, the complex bodies of vertebrates might not be amendable to reduction below a certain level of complexity. We [...]
Handling Character Dependency in Phylogenetic Inference: Extensive Performance Testing of Assumptions and Solutions Using Simulated Data
Published: 2022-04-07
Subjects: Animal Sciences, Bioinformatics, Ecology and Evolutionary Biology, Evolution, Life Sciences, Research Methods in Life Sciences
Character dependency is a major conceptual and methodological problem in phylogenetic inference of morphological datasets, as it violates the assumption of characters independency that is common to all phylogenetic methods. It is more frequently observed in higher-level phylogenies or in datasets characterizing major evolutionary transitions, as these represent parts of the tree of life where [...]
The evolution of conspicuousness in frogs: when to signal toxicity?
Published: 2022-04-06
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Evolution, Life Sciences
Many organisms use conspicuous color patterns to advertise their toxicity or unpalatability, a strategy known as aposematism. Despite the recognized benefits of this anti-predator tactic, not all chemically defended species exhibit warning coloration. Here, we use a comparative approach to investigate which factors predict the evolution of conspicuousness in frogs, a group in which conspicuous [...]
Reducing the biases in false correlations between discrete characters
Published: 2022-04-01
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences, Other Ecology and Evolutionary Biology
The correlation between two characters is often interpreted as evidence that there exists a significant and biologically important relationship between them. However, Maddison and FitzJohn (2015) recently pointed out that in certain situations find evidence of correlated evolution between two categorical characters is often spurious, particularly, when the dependent relationship stems from a [...]