Preprints
Filtering by Subject: Evolution
How do microbes grow in nature? The role of population dynamics in microbial ecology and evolution
Published: 2023-02-25
Subjects: Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Evolution, Life Sciences, Microbiology, Systems Biology
The growth of microbial populations in nature is dynamic, as the cellular physiology and environment of these populations change. Population dynamics have wide-ranging consequences for ecology and evolution, determining how species interact and which mutations fix. Understanding these dynamics is also critical for clinical and environmental applications in which we need to promote or inhibit [...]
Extra-pair paternity, breeding density and synchrony in natural cavities versus nestboxes in two passerine birds
Published: 2023-02-17
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Evolution, Life Sciences, Ornithology
Most of what is known about extra-pair paternity in hole-nesting birds derives from studies using artificial nesting sites, such as nestboxes. However, it has rarely been investigated whether inference drawn from breeding events taking place in nestboxes matches what would be observed under natural conditions, i.e. in natural cavities. We here report on a variation in promiscuity in blue tits and [...]
Prestige bias in cultural evolutionary dynamics
Published: 2023-02-16
Subjects: Evolution, Life Sciences, Social and Cultural Anthropology
If the traits of more successful individuals are more likely to be adopted, the resulting cultural transmission is described as being success-biased. Prestige may be used as a proxy for success. Here, we model prestige bias as a combination of indirect success bias and influence bias, the latter meaning that the choice of a role-model depends on the number of individuals that have already copied [...]
Heritability and age-dependent changes in genetic variation of telomere length in a wild house sparrow population
Published: 2023-02-13
Subjects: Evolution
Telomeres are a popular biomarker of senescence, as telomere dynamics are linked with survival and lifespan. However, the evolutionary potential of telomere dynamics, and the selection pattern that gives rise to senescence, are not well known. To better understand this, it is necessary to quantify genetic variation in telomere length, and how such variation changes with age. Here, we analysed a [...]
Keep your cool: Overwintering physiology in response to urbanization in the acorn ant, Temnothorax curvispinosus
Published: 2023-02-10
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Winter presents a challenge for survival, yet temperate ectotherms have remarkable physiological adaptations to cope with low-temperature conditions. Under recent climate change, rather than strictly relaxing pressure on overwintering survival, warmer winters can instead disrupt these low-temperature trait-environment associations, with negative consequences for populations. While there is [...]
Evolutionary walks through flower color space driven by gene expression in Petunia and allies (Petunieae)
Published: 2023-02-03
Subjects: Biology, Evolution, Life Sciences
The structure and function of biochemical and developmental pathways determine the range of accessible phenotypes, which are the substrate for evolutionary change. Accordingly, we expect that observed phenotypic variation across species is strongly influenced by pathway structure, with different phenotypes arising due to changes in activity along pathway branches. Here, we use flower colour as a [...]
Developmental environments do not affect thermal physiological traits in reptiles: An experimental test and meta-analysis
Published: 2023-01-18
Subjects: Evolution, Integrative Biology, Other Ecology and Evolutionary Biology
On a global scale, organisms face significant challenges due to climate change and anthropogenic disturbance. In many ectotherms, developmental and physiological processes are sensitive to changes in temperature and resources. Developmental plasticity in thermal physiology may provide adaptive advantages to environmental extremes if early environmental conditions are predictive of late-life [...]
How do monomorphic bacteria evolve? The Mycobacterium tuberculosis complex and the awkward population genetics of extreme clonality
Published: 2022-12-15
Subjects: Evolution, Genetics and Genomics, Genomics, Life Sciences, Molecular Genetics, Pathogenic Microbiology, Population Biology
Exchange of genetic material through sexual reproduction or horizontal gene transfer is ubiquitous in nature. Among the few outliers that rarely recombine and mainly evolve by de novo mutation are a group of deadly bacterial pathogens, including the causative agents of leprosy, plague, typhoid, and tuberculosis. The interplay of evolutionary processes is poorly understood in these organisms. [...]
Advances in the reconstruction of the Spider Tree of Life: a roadmap for spider systematics and comparative studies
Published: 2022-12-14
Subjects: Biodiversity, Ecology and Evolutionary Biology, Entomology, Evolution, Genomics, Life Sciences, Other Ecology and Evolutionary Biology
In the last decade and a half, advances in genetic sequencing technologies have revolutionized systematics, transforming the field as studying morphological characters; a few genetic markers have given way to genomic data sets in the phylogenomic era. A plethora of molecular phylogenetic studies on many taxonomic groups have come about, converging on, or refuting prevailing morphology or [...]
Comparative analysis reveals assortative mate preferences in darters independent of sympatry and sex
Published: 2022-12-07
Subjects: Ecology and Evolutionary Biology, Evolution
A preference for mating with conspecifics over heterospecifics is fundamental to the maintenance of species diversity in sexually reproducing organisms. This type of positive assortative mating results in sexual isolation, a reduction in gene flow between species due to differences in mate choice. Sexual isolation is often stronger between closely related sympatric species as compared to [...]
Alternative reading frames are an underappreciated source of protein sequence novelty
Published: 2022-12-05
Subjects: Ecology and Evolutionary Biology, Evolution, Genetics and Genomics, Genomics, Life Sciences
Alternative reading frames of protein coding genes are a major contributor to the evolution of novel protein products. Recent studies demonstrating this include examples across the three domains of cellular life and in viruses. Alternative frame sequences both increase the number of trials available for the evolutionary invention of new genes and have unusual properties which may facilitate gene [...]
A tale of two genomes: What drives mitonuclear discordance in asexual lineages of a freshwater snail?
Published: 2022-11-21
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
We use genomic information to tell us stories of evolutionary origins. But what does it mean when different genomes report wildly different accounts of lineage history? This “discordance” can be a consequence of a fascinating suite of natural history and evolutionary phenomena, from the different inheritance mechanisms of nuclear vs. cytoplasmic genomes to hybridization and introgression to [...]
Misrepresenting biases in arrival: a comment on Svensson (2022)
Published: 2022-11-17
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
The idea that adaptive change is subject to biases in variation by a "first come, first served" dynamic is not part of classic evolutionary reasoning. Yet, predictable effects of biases in the introduction of variation have been reported in models of population genetics, in laboratory evolution, and in retrospective analyses of natural adaptation. This effect of "arrival bias" has potentially [...]
Evolutionary origins of the Mesoamerican-eastern United States floristic disjunction: current status and future prospects
Published: 2022-11-07
Subjects: Biodiversity, Biology, Botany, Ecology and Evolutionary Biology, Evolution, Life Sciences, Plant Sciences
Biogeographic disjunction patterns, where multiple taxonomic groups are shared between isolated geographic areas, represent excellent systems for investigating the historical assembly of modern biotas as well as fundamental biological processes such as speciation, diversification, niche evolution, and evolutionary responses to climate change. Studies on plant genera disjunct across the Northern [...]
Incompatibility and interchangeability in molecular evolution
Published: 2022-11-02
Subjects: Evolution, Life Sciences, Molecular Genetics
There is remarkable variation in the rate at which genetic incompatibilities in molecular interactions accumulate. In some cases, minor changes – even single nucleotide substitutions – create major epistatic incompatibilities when hybridization forces new variants to function in a novel genetic background from an isolated population. In other cases, genes or even entire functional pathways can be [...]