Preprints
Filtering by Subject: Biology
On the Origin of Nightjars (Caprimulgidae): Perspectives from the Fossil Record
Published: 2024-09-12
Subjects: Biology, Ecology and Evolutionary Biology, Evolution, Life Sciences, Paleobiology, Paleontology
Fossils represent the only direct evidence for the ancestral morphologies, antiquity, and historical geographic distributions of life on Earth. The fossil record of the avian clade Strisores (which includes nightjars, oilbirds, potoos, frogmouths, owlet-nightjars, treeswifts, swifts, and hummingbirds) has been richly documented by avian standards, with well-corroborated stem-group representatives [...]
Reconsidering cytonuclear discordance in the genomic age
Published: 2024-09-12
Subjects: Biology, Ecology and Evolutionary Biology
Historically, phylogenetic datasets had relatively few loci but were overrepresented for cytoplasmic sequences (mitochondria and chloroplast) because of their ease of amplification and large numbers of informative sites. Under those circumstances, it made sense to contrast individual gene tree topologies obtained from cytoplasmic loci and nuclear loci, with the goal of detecting differences [...]
Repeatability and intra-class correlations from time-to-event data: towards a standardized approach
Published: 2024-07-20
Subjects: Behavior and Ethology, Biology, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology, Research Methods in Life Sciences
Many biological features are expressed as “time-to-event” traits, such as time to first reproduction or response to some stimulus. The analysis of these traits frequently produces right-censored data in cases where no event has occurred within a certain timeframe. The Cox proportional hazards (CPH) model, a type of survival analysis, accounts for censored data by estimating the hazard of an event [...]
Variation in the diversity of Sotalia (Cetacea:Delphinidae) dolphin whistle repertoires at a continental scale
Published: 2024-07-08
Subjects: Animal Sciences, Biodiversity, Biology, Ecology and Evolutionary Biology, Social and Behavioral Sciences
1. While cetaceans are known to produce large and complex acoustic repertoires, the challenges of exhaustively sampling sounds at sea and counting relevant signals has precluded an understanding of their true repertoire diversity. 2. Here we quantify and compare the whistle repertoires of 16 populations in the genus Sotalia, belonging to two sister species, the Guiana dolphin (Sotalia [...]
From eggs to adulthood: sustained effects of early developmental temperature and corticosterone exposure on physiology and body size in an Australian lizard
Published: 2024-06-28
Subjects: Biochemistry, Biophysics, and Structural Biology, Biology, Integrative Biology, Life Sciences, Other Ecology and Evolutionary Biology
As global temperatures continue to rise due to climate change, developing animals may be increasingly exposed to elevated temperatures. Developing vertebrates can be affected by elevated temperatures directly, and indirectly through maternal effects such as increased exposure to prenatal glucocorticoid hormones. Although many studies have examined how elevated temperatures and glucocorticoid [...]
Phenological Patterns of Woody Plant Species in a Tropical Dry Forest, Bannerghatta National Park, Bengaluru
Published: 2024-06-27
Subjects: Biodiversity, Biology, Ecology and Evolutionary Biology, Forest Sciences, Life Sciences, Plant Sciences
Phenology is the study of the timing of recurring natural stages in the life cycle of an organism. These natural stages, such as the plant's reproductive cycles, are being affected by the changing climate. The current study aims to understand the effect of weather parameters on the phenology of dry forests in Bannerghatta National Park. Two transects with 504 reproductively mature individuals [...]
Genetic variation of heat tolerance in a model ectotherm: an approach using thermal death time curves
Published: 2024-06-19
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences, Physiology
The assessment of thermal tolerance holds significant importance in predicting the physiological responses of ectotherms, particularly in elucidating their capacity for evolutionary adaptation in the context of global warming. Current approaches to assessing thermal tolerance have limitations that can lead to misleading results, especially with regard to the heritability of thermal limits. [...]
Behavioral flexibility is similar in two closely related species where only one is rapidly expanding its geographic range
Published: 2024-06-06
Subjects: Behavior and Ethology, Biology, Comparative Psychology, Ecology and Evolutionary Biology, Life Sciences, Population Biology
Human-modified environments are rapidly increasing, which puts other species in the precarious position of either adapting to the new challenges or, if they are not able to adapt, shifting their range to a more suitable environment. It is generally thought that behavioral flexibility, the ability to change behavior when circumstances change, plays an important role in the ability of a species to [...]
Familiarity with social partners influences affiliative interactions but not spatial associations
Published: 2024-05-31
Subjects: Behavior and Ethology, Biology
To successfully navigate complex social environments, animals must manage their relationships with familiar group members and strangers introduced via fission-fusion or demographic processes by deciding who, how often, and when to interact. However, it is not clear how animals balance the risks and benefits of interacting with familiar and stranger conspecifics. We studied whether familiarity [...]
Poor hypotheses and research waste in biology: learning from a theory crisis in psychology
Published: 2024-05-27
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences
While psychologists have extensively discussed a ‘theory crisis’, there has been no debate about such a crisis in biology. However, biologists, especially those working in the fields of ecology and evolution, have long discussed communication failures between theoreticians and empiricists. We argue such failure is one aspect of a theory crisis because misapplied and misunderstood [...]
Navigating phylogenetic conflict and evolutionary inference in plants with target capture data
Published: 2024-05-27
Subjects: Bioinformatics, Biology, Botany, Ecology and Evolutionary Biology, Evolution, Life Sciences, Plant Sciences, Research Methods in Life Sciences
Target capture has quickly become a preferred approach for plant systematic and evolutionary research, marking a step-change in the generation of data for phylogenetic inference. While this advancement has facilitated the resolution of many relationships, phylogenetic conflict continues to be reported, and often attributed to genome duplication, reticulation, incomplete lineage sorting or rapid [...]
Behavioral flexibility is related to foraging, but not social or habitat use behaviors, in a species that is rapidly expanding its range
Published: 2024-05-24
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences, Psychology
The ability of other species to adapt to human modified environments is increasingly crucial because of the rapid expansion of this landscape type. Behavioral flexibility, the ability to change behavior in the face of a changing environment by packaging information and making it available to other cognitive processes, is hypothesized to be a key factor in a species’ ability to successfully adapt [...]
Advancing single species abundance models: robust models for predicting abundance using co-occurrence from communities
Published: 2024-05-10
Subjects: Aquaculture and Fisheries Life Sciences, Biology
Accurate estimates of abundance are crucial for successful conservation and management. However, gathering abundance data is costly. Species Abundance Models (SAMs) are increasingly used to predict variation in abundance for resource management for single species, but collecting enough relevant environmental information to build effective SAMs can often be challenging. Species co-occurrence [...]
University herbaria are uniquely important
Published: 2024-05-02
Subjects: Biodiversity, Biology, Ecology and Evolutionary Biology, Life Sciences
University herbaria play critical roles in biodiversity research and training and provide an interdisciplinary academic environment that fosters innovative uses of natural history collections. Universities have a responsibility to steward these important collections in perpetuity, in alignment with their academic missions and for the good of science and society.
Why there are so many definitions of fitness in models
Published: 2024-04-11
Subjects: Biology, Computational Biology, Ecology and Evolutionary Biology, Evolution, Genetics, Genetics and Genomics, Life Sciences, Population Biology
“Fitness” quantifies the ability to survive and reproduce, but is operationalized in many different ways. Generally, short-term fitness (e.g., expected number of surviving offspring) is assigned to genotypes or phenotypes, and used to non-trivially derive longer-term operationalizations of fitness (e.g. fixation probability or sojourn time), providing insight as to which organismal strategies [...]