Preprints
Filtering by Subject: Biology
Sexual system variation in legumes (Leguminosae): underpinning genomic study with new tools to describe inflorescence morphology
Published: 2024-02-01
Subjects: Biology, Botany, Plant Biology, Plant Breeding and Genetics Life Sciences, Plant Sciences
Although the great majority of legume species are cosexual with hermaphrodite flowers, a variety of sexual systems are observed in the family, including monoecy, andromonoecy, androdioecy and dioecy. Such broad terms conceal much variation, details that may be of importance in understanding the evolutionary and ecological basis of reproductive systems. This variation is often inadequately [...]
The genetic basis of a regionally isolated sexual dimorphism involves cortex
Published: 2024-01-29
Subjects: Biology, Evolution, Genetics and Genomics, Other Ecology and Evolutionary Biology, Population Biology
Sexual dimorphisms represent a source of phenotypic variation and result from differences in how natural and sexual selection act on males and females within a species. Identifying the genetic basis of dimorphism can be challenging, especially once it is fixed within a species. However, studying polymorphisms, even when fixed within a population, can provide insights into the genetic basis of [...]
Switching to bioplastics may exacerbate ingestion of lost and discarded fishing gear by marine invertebrates
Published: 2024-01-09
Subjects: Animal Experimentation and Research, Biology, Environmental Health Life Sciences, Life Sciences, Marine Biology, Natural Resources and Conservation, Sustainability
Bioplastics are argued to be more environmentally sustainable than conventional plastics. Yet, little is known about how bioplastics degrade in marine environments or their likelihood of being ingested by animals. We measured changes in the weight of biodegradable, semi-biodegradable, and non-biodegradable fishing gears (soft plastic lures, SPLs) in or out of seawater over 14 days. We then [...]
Inferring the seasonal dynamics and abundance of an invasive species using a spatio-temporal stacked machine learning model
Published: 2023-12-22
Subjects: Biology, Entomology, Life Sciences, Population Biology, Public Health, Virus Diseases
Various modelling techniques are available to understand the temporal and spatial variations of the phenology of species. Scientists often rely on correlative models, which establish a statistical relationship between a response variable (such as species abundance or presence-absence) and a set of predominantly abiotic covariates. The modelling approach choice, i.e. the algorithm, is a crucial [...]
Quantifying clearance rates of restored shellfish reefs using modular baskets
Published: 2023-12-08
Subjects: Animal Experimentation and Research, Aquaculture and Fisheries Life Sciences, Biology, Ecology and Evolutionary Biology, Environmental Indicators and Impact Assessment, Environmental Monitoring, Environmental Sciences, Life Sciences, Marine Biology, Oceanography and Atmospheric Sciences and Meteorology, Research Methods in Life Sciences, Terrestrial and Aquatic Ecology, Water Resource Management, Zoology
Shellfish reefs are among the most degraded ecosystems globally, prompting substantial efforts to restore them. While biodiversity gains of restored reefs are well documented, other ecosystem services such as water filtration remain poorly quantified. We present a novel way of measuring water filtration by restored reefs using modular restoration structures called Robust Oyster Baskets (ROB 400). [...]
Linking biodiversity and nature’s contributions to people (NCP): a macroecological energy flux perspective
Published: 2023-12-08
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences
Linking biodiversity and the provision of nature’s contribution to people (NCP) remains a challenge. This hinders our ability to properly cope with the decline in biodiversity and the provision of NCP under global climate and land use changes. Here, we propose a framework that combines biodiversity models with food web energy flux approaches to evaluate and map NCP at large spatio-temporal [...]
The Palearctic view on a bat fungal disease
Published: 2023-12-08
Subjects: Animal Sciences, Biology, Immunology and Infectious Disease, Life Sciences, Zoology
The fungal infection causing white-nose disease in hibernating bats in North America has resulted in dramatic population declines of affected species since it was first discovered in 2007. Shortly after, it was demonstrated that the causative agent, Pseudogymnoascus destructans, is native to the Palearctic, where it also infects several bat species. However, infection in the Palearctic rarely [...]
Towards the next generation of species delimitation methods: an overview of Machine Learning applications
Published: 2023-12-07
Subjects: Biology, Computational Biology, Ecology and Evolutionary Biology, Genetics and Genomics
Species delimitation is the process of distinguishing between populations of the same species and distinct species of a particular group of organisms. Various methods exist for inferring species limits, whether based on morphological, molecular, or other types of data. In the case of methods based on DNA sequences, most of them are rooted in the coalescent theory. However, coalescence-based [...]
Functional coherence among miRNA targets: a potential metric for assessing biological signal among target prediction methods in non-model species
Published: 2023-11-30
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences
Although miRNA regulation of protein production is a likely target of adaptive evolution, high false-positive rates in the identification of mRNAs targeted by miRNAs in non-model species’ complicates interpretation of recent advances. Here we document the challenges and then outline steps for the community to address these challenges.
Vocal Dimorphism in Anna’s Hummingbirds
Published: 2023-11-28
Subjects: Animal Sciences, Behavior and Ethology, Biology, Ecology and Evolutionary Biology, Integrative Biology, Life Sciences, Ornithology, Zoology
Whereas vocal sexual dimorphism is widespread amongst birds, it has been historically overlooked in non-passerines such as hummingbirds. By evaluating correlations among sex, behaviors, and vocalizations, the meaning and utility of intentional sound production may be inferred. Anna's Hummingbirds (Calypte anna) exhibit pronounced sexual dimorphism, with males being larger and having more vibrant [...]
Opinion: Missing half the picture, focus on stony corals during bleaching events has left critical knowledge gaps in our understanding of reef-scale bleaching and recovery
Published: 2023-11-28
Subjects: Biodiversity, Biology, Ecology and Evolutionary Biology, Life Sciences, Marine Biology, Other Ecology and Evolutionary Biology
Covariance reaction norms: A flexible method for estimating complex environmental effects on trait (co)variances
Published: 2023-11-21
Subjects: Behavior and Ethology, Biology, Ecology and Evolutionary Biology, Evolution, Genetics, Integrative Biology, Life Sciences, Population Biology, Research Methods in Life Sciences, Zoology
Estimating quantitative genetic and phenotypic (co)variances is crucial for investigating evolutionary ecological phenomena such as developmental integration, life history tradeoffs, and niche specialization, as well as for describing selection and predicting multivariate evolution in the wild. While most studies assume (co)variances are fixed over short timescales, environmental heterogeneity [...]
The sugar kelp Saccharina latissima II: Recent Advances in farming and applications
Published: 2023-11-20
Subjects: Biology, Life Sciences
The sugar kelp Saccharina latissima has received intense scientific attention over the last decades. In recent years, interest in cultivation of the species has strongly increased in the North Atlantic Ocean and the Eastern Pacific Ocean, driven by the great potential of S. latissima to be utilised for various industrial applications, including food, feed, and biomaterials. Accordingly, current [...]
Impacts of necrotising disease on the Endangered cauliflower soft coral Dendronephthya australis
Published: 2023-11-20
Subjects: Biology, Life Sciences
Context: Diseases have impacted coral populations worldwide, leading to population declines and requiring active restoration efforts. Aims: Describe population and individual impacts of necrotising disease in the Endangered octocoral Dendronephthya australis. Methods: We quantified population loss and recruitment using reference photos, survey, and GPS mapping and described disease lesions [...]
Automated tracking of avian parental care behavior
Published: 2023-11-16
Subjects: Behavior and Ethology, Biology, Life Sciences
1. Parental care may be an important source of phenotypic variation for ecological and evolutionary processes. However, it can be difficult to collect and interpret data on parental care behaviors. To address these challenges, we developed a new hardware and software platform for automated behavioral tracking called ABISSMAL (Automated Behavioral Tracking by Integrating Sensors that Survey [...]