Preprints
Filtering by Subject: Ecology and Evolutionary Biology
Oxygen supersaturation has negligible effects on warming tolerance in aquatic ectotherms
Published: 2025-05-16
Subjects: Aquaculture and Fisheries Life Sciences, Ecology and Evolutionary Biology, Marine Biology
Under the midday sun when photosynthesizers are producing oxygen, shallow aquatic ecosystems can become supersaturated with oxygen (>100% air saturation) while they simultaneously peak in water temperature. It has been suggested that oxygen supersaturation could protect water-breathing animals from mortality during heatwaves because of the potential role of oxygen in governing thermal [...]
The burden of a failed error culture in biologging
Published: 2025-05-15
Subjects: Ecology and Evolutionary Biology, Life Sciences
Driven by technological advancements and reduced costs, biologging has seen a rapid growth transforming the study of animal behaviour and ecology providing unprecedented insights into wildlife, aiding conservation efforts and ecological research. However, in the wake of the rapid growth loom pressing ethical and methodological challenges, including a lack of error reporting, inconsistent [...]
Pervasive Negative Effects of Leucaena leucocephala (White-Popinac) Invasion on Regenerating Areas of the Atlantic Forest
Published: 2025-05-13
Subjects: Ecology and Evolutionary Biology
The use of invasive species in ecological restoration is controversial and has raised recent concerns. In Brazil, some ecosystem restoration and agroforestry projects have proposed that white-popinac (Leucaena leucocephala (Lam.) de Wit), a broadly distributed invasive species, is a promisor species to be used when the soil is severely altered, based on the premise that it might not necessarily [...]
Proximity to natural habitat is not consistently associated with pollination services in tropical smallholder farms: A systematic review and meta-analysis
Published: 2025-05-13
Subjects: Agriculture, Biodiversity, Ecology and Evolutionary Biology, Entomology
Proximity to natural habitat is known to enhance pollination services in large-scale agriculture, but it remains unclear whether this holds in tropical smallholder farms. These systems are embedded in ecologically complex landscapes, central to global food security, and depend heavily on biodiversity-derived ecosystem services. We conducted a systematic review and meta-analysis of 35 studies [...]
Ecological traits explain wild felid responses to human-modified landscapes in Brazil: an open-data approach for conservation
Published: 2025-05-13
Subjects: Ecology and Evolutionary Biology, Life Sciences
Understanding how wild felids respond to human-modified landscapes is critical for designing effective conservation strategies, yet comparative assessments across species remain scarce in tropical regions. Here, we assess the habitat selection and road sensitivity of nine wild felid species in Brazil using an integrative and scalable framework based entirely on open-access data. We compiled over [...]
Negative effects of climate change and fishing activities on Alaskan seabird populations (2002-2011)
Published: 2025-05-12
Subjects: Ecology and Evolutionary Biology, Life Sciences, Population Biology, Terrestrial and Aquatic Ecology
Seabird populations along the Alaskan coast have been rapidly declining due to anthropogenic climate change and other associated factors. This study examines the effects of sea surface temperature (SST) and fishing activity on the abundance of Alaskan seabird species. We downloaded bird observation data from the International Pacific Halibut Commission (IPHC) and then matched the seabird [...]
Differential assembly of core and non-core host-microbe network structures along a land-use change gradient
Published: 2025-05-12
Subjects: Ecology and Evolutionary Biology, Life Sciences
Microbial communities are fundamental to host health, yet their assembly dynamics under environmental change remain poorly understood. We analyzed individual-level host-microbe networks in the non-native wild black rats (Rattus rattus) across a land-use gradient in Madagascar. By applying a moving prevalence threshold, we distinguished between core and non-core microbes and compared the assembly [...]
Microclimf: fast modelling of microclimate across real landscapes in R
Published: 2025-05-08
Subjects: Biochemistry, Biophysics, and Structural Biology, Climate, Ecology and Evolutionary Biology
1. Many ecological studies require climate data, but readily available datasets are poor surrogates for the conditions that organisms experience in nature. Understanding the climatic conditions experienced by organisms requires modelling microclimate rather than relying on coarse, station-based climate data. 2. I present microclimf, a mechanistic microclimate model designed for computationally [...]
The promise of environmental RNA research beyond mRNA
Published: 2025-05-08
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences
Environmental RNA (eRNA) studies have primarily focused on species detection and community composition through metabarcoding or metatranscriptomics, and on gene expression through messenger RNA (mRNA) abundance analysis. While valuable, this focus overlooks the broader functional roles of other RNA types in cellular metabolism. Beyond mRNA, non-coding RNAs as well as structural RNAs play critical [...]
Removing dead coral after marine heatwaves can mitigate coral-algae competition and increase viable coral recruitment
Published: 2025-05-08
Subjects: Ecology and Evolutionary Biology, Marine Biology
Ecological disturbance regimes are shifting and leaving behind novel legacies, like the remnant structures of dead foundation species, which have poorly known impacts on ecosystem resilience. We explored how dead coral skeletons produced by marine heatwaves–material legacies of increasingly common disturbances on coral reefs–influence spatial competition between corals and macroalgae, focusing on [...]
Predicting high pathogenicity avian influenza H5N1 susceptibility in wild birds
Published: 2025-05-07
Subjects: Ecology and Evolutionary Biology, Immunology and Infectious Disease
High pathogenicity avian influenza (HPAI) has caused widespread sickness and mortality in wildlife, especially since the emergence of a novel H5 virus belonging to clade 2.3.4.4b in 2021. The ongoing panzootic caused by this lineage has infected an unprecedented diversity of species across the globe, seeming capable of impacting all birds. Here, we analyse ecological and phylogenetic patterns in [...]
IQ2MC: A New Framework to Infer Phylogenetic Time Trees Using IQ-TREE 3 and MCMCTree with Mixture Models
Published: 2025-05-06
Subjects: Bioinformatics, Computational Biology, Ecology and Evolutionary Biology, Evolution, Genetics, Genetics and Genomics, Genomics, Life Sciences
IQ-TREE and MCMCTree are two widely used phylogenetic tools to infer phylogenetic trees and estimate divergence times, respectively. As MCMCTree performs fast approximate Markov Chain Monte Carlo sampling to obtain the times along a fixed tree topology, it would be natural to use IQ-TREE to obtain the tree. However, it is currently not possible to integrate these tools seamlessly, as MCMCTree [...]
Evolutionary rate incongruences in squamates reveal contrasting patterns of evolutionary novelties and innovation
Published: 2025-05-06
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Understanding the rate of phenotypic evolution can reveal fundamental aspects of organismal evolutionary trajectories. Hence, several studies have attempted to detect the tempo of evolution for multiple organisms, although based on radically different datatypes (e.g., discrete and morphometric) and methods (phylodynamic vs comparative methods). Here, we ask whether these competing approaches [...]
Practical genetic diversity protection: an accessible framework for IUCN subpopulation and Evolutionarily Significant Unit identification
Published: 2025-05-05
Subjects: Biodiversity, Ecology and Evolutionary Biology, Genetics and Genomics, Life Sciences
The International Union for Conservation of Nature (IUCN) sets global conservation standards, including the Red List of Threatened Species and the Green Status of Species. Recent analyses showed that genetic diversity has not been effectively considered by IUCN species assessments, despite being fundamental to species’ fitness and adaptive potential. Incorporation of genetic diversity into IUCN [...]
Genetic load in Evolutionarily Significant Units (ESUs): conservation and management implications
Published: 2025-05-05
Subjects: Biodiversity, Ecology and Evolutionary Biology, Genetics and Genomics, Life Sciences
The Conservation Genetics Specialist Group of the International Union for Conservation of Nature (IUCN) proposes introducing Evolutionarily Significant Units (ESUs) as an additional new assessment unit in the IUCN Red List and Green Status. This proposal is made because ESUs possess unique evolutionary trajectories present within species and harbour genetic diversity that requires safeguarding. [...]