Preprints
Filtering by Subject: Ecology and Evolutionary Biology
The IUCN Red List is not sufficient to protect genetic diversity
Published: 2022-08-01
Subjects: Ecology and Evolutionary Biology, Life Sciences
The International Union for Conservation of Nature (IUCN) Red List is an important and widely used conservation prioritization tool. It uses information about species range size, habitat quality and fragmentation levels, and trends in abundance to assess species extinction risk. Genetic erosion is an additional key factor determining extinction risk, but the Red List was not designed to assess [...]
Experimental validation of transposable element insertions using the Polymerase Chain Reaction (PCR)
Published: 2022-07-30
Subjects: Biology, Ecology and Evolutionary Biology, Evolution, Life Sciences
Transposable elements (TEs), also known as transposons, are repetitive DNA sequences, present in virtually all organisms, that can move from one genomic position to another. TEs can be a source of mutations with important consequences for organisms. Despite their interest, its repetitive nature has made their study very challenging. However, the emergence of new sequencing technologies that allow [...]
The courage of hopelessness: a transformative change for conservation sciences
Published: 2022-07-29
Subjects: Biodiversity, Ecology and Evolutionary Biology, Environmental Studies, Life Sciences, Social and Behavioral Sciences
As the twenty-first century unfolds, the human-driven decline of life on Earth is of greater concern and, despite tremendous growth in the volume of conservation science and many local successes, shows no clear signs of improvement. As a matter of fact, the reversal of nature’s ongoing decline is only possible with urgent “transformative change” However, no transformative changes are viable [...]
Female preferences for higher vocal effort in Neotropical singing mice
Published: 2022-07-29
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Life Sciences
Despite the importance of vocalizations in mammalian sociosexual communication, little is known about female preferences for male vocal displays in wild mammals. Here, we characterized female preferences for the advertisement songs of male Alston’s singing mice (Scotinomys teguina). We developed procedures for inducing estrus, using vaginal morphology as a bioindicator. We then broadcasted [...]
European light skin may have evolved as an adaptation to the Neolithic sedentary lifestyle
Published: 2022-07-27
Subjects: Bioinformatics, Biology, Ecology and Evolutionary Biology, Evolution, Life Sciences, Population Biology
Light skin facilitates the penetration of ultraviolet light (UV) radiation through the skin, increasing the synthesis of vitamin D that in turn stimulates bone formation. It has been suggested that light skin appeared in the ancestors of modern Europeans as an adaptation to the conditions of low UV radiation in high latitudes; however, paleogenetic studies have recently shown it did not evolve [...]
Generation and applications of simulated datasets to integrate social network and demographic analyses
Published: 2022-07-27
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Life Sciences, Population Biology
Social networks are tied to population dynamics; interactions are driven by population density and demographic structure, while social relationships can be key determinants of survival and reproductive success. However, difficulties integrating models used in demography and network analysis have limited research at this interface. We introduce the R package genNetDem for simulating integrated [...]
Effects of helicopter skiing on mountain goats and woodland caribou in British Columbia
Published: 2022-07-25
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
Helicopter skiing is a popular adventure tourism activity that occurs within the range of mountain goats (Oreamnos americanus) and/or woodland caribou (Rangifer tarandus caribou) in British Columbia and, to a lesser extent in adjacent jurisdictions. Both are species of concern, with known or suspected population declines occurring in substantial portions of their respective ranges. Whether [...]
Shared neural transcriptomic patterns underlie the repeated evolution of mutualistic cleaning behavior in Labridae wrasses
Published: 2022-07-25
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Despite the remarkable diversity of life forms on earth, evolutionary biologists have discovered numerous instances where even distantly related species share astonishing similarities in how they behave, look, and function. Given the importance of happenstance in evolution (e.g., random mutations, genetic drift, environmental stochasticity), it is often assumed that the mechanisms underlying such [...]
Effect of Forest Understorey Stand Density on Woodland Caribou Habitat Use
Published: 2022-07-21
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
Woodland caribou are considered to preferentially use older forests that provide abundant terrestrial lichen forage and refuge from predators. However, structural characteristics vary widely, differing in terms of forage availability but also, perhaps, in the ability of caribou to move freely through forests to access the available forage or to escape predation. We examined the effect of forest [...]
Social manipulations trigger shifts in group-level dominance patterns
Published: 2022-07-20
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Life Sciences
Recent computational approaches discovered group-level patterns within dominance hierarchies which are based on relative rank differences between individuals. Within species, groups could follow different dominance patterns, indicating these patterns could be group- rather than species-specific traits. Moreover, these patterns differ in complexity, with some requiring an individual to access more [...]
fundiversity: a modular R package to compute functional diversity indices
Published: 2022-07-18
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology, Research Methods in Life Sciences
1. Functional diversity is widely used and widespread. However, the main package used to compute functional diversity indices FD is not flexible and not adapted to the volume of data used in modern ecological analyses. 2. We here present fundiversity, an R package that eases the computation of classical functional diversity indices. It leverages parallelization and memoization (caching results [...]
Social niche shapes social behavior and cortisol concentrations during adolescence in female guinea pigs
Published: 2022-07-15
Subjects: Behavior and Ethology, Biology, Ecology and Evolutionary Biology, Life Sciences
Individualized social niches arise in social groups and are associated with behavior and hormone (e.g. cortisol) concentrations. During sensitive life phases, social interactions can have a profound impact on the development of social behavior. Focusing on adolescence, we aimed to investigate the relationship between the social niche, social behavior, and cortisol concentrations (baseline and [...]
The role of genomics in the future of Endangered Species Act decision-making
Published: 2022-07-14
Subjects: Biodiversity, Ecology and Evolutionary Biology, Genetics and Genomics, Life Sciences
The U.S. Endangered Species Act (ESA) provides a framework for the protection and recovery of threatened and endangered species and their habitats in the face of anthropogenic threats. Genetic information has played a role in decision-making under the ESA for decades, most commonly informing taxonomy and the designation of distinct population segments, though detection of inbreeding also played [...]
Jointly Modeling the Evolution of Discrete and Continuous Traits
Published: 2022-07-13
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Whether modeling the evolution of a discrete or continuous character, the focal trait of interest does not evolve in isolation and require comparative methods that model multivariate evolution. Progress along these lines has involved modeling multivariate evolution of the same class of character and there are fewer options when jointly modeling traits when one character is discrete and the other [...]
The brain’s bootstrapping problem and its consequences: Parental provisioning and variation in vertebrate brain sizes
Published: 2022-07-05
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Our understanding of the considerable variation in vertebrate brain size remains incomplete. Large brains are adaptive but brains require unusually high, near-constant energy inputs, and are prioritized energy targets. This trade-off also has understudied developmental consequences: immatures must develop a fully functional brain without already having one. We here propose that energy subsidies [...]