Preprints
Filtering by Subject: Microbiology
How microbes can, and cannot, be used to assess soil health
Published: 2020-09-07
Subjects: Biodiversity, Biology, Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Microbiology, Terrestrial and Aquatic Ecology
Healthy soils are critical to the health of ecosystems, economies, and human populations. Thus, it is widely acknowledged that soil health is important to quantify, both for assessment and as a tool to help guide management strategies. What is less clear is how soil health should actually be measured, especially considering that soil health is not exclusively a product of soil physical and [...]
VIRUS-HOST RELATIONSHIPS: AN OVERVIEW
Published: 2020-08-30
Subjects: Agriculture, Ecology and Evolutionary Biology, Life Sciences, Microbiology, Other Ecology and Evolutionary Biology, Virology
In order to survive in nature, different pathogens follow different procedures to manipulate their host plants for the pathogen favor. Plant viruses are not an exception of this rule. They are often found to alter the host plant traits in the way that affects the community of organisms in the host plant as well as the vectoring insects. It has been indicated that virus-infected plants are more [...]
The quest for absolute abundance: the use of internal standards for DNA-based microbial and community ecology
Published: 2020-03-26
Subjects: Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Microbiology
To characterize microbiomes and other ecological assemblages, ecologists routinely sequence and compare loci that differ among focal taxa. Counts of these sequences convey information regarding the occurrence and relative abundances of taxa, but provide no direct measure of their absolute abundances, due to the technical limitations of the sequencing process. The relative abundances in [...]
Yeast lines selected for non-quiescence show increased protein content
Published: 2019-08-06
Subjects: Ecology and Evolutionary Biology, Life Sciences, Microbiology, Nutrition, Organismal Biological Physiology
Increasing demand for food production requires improvements as well as openness to new sources of protein. Single Cell Protein derived from microbes has been intensively studied as a supplement for traditional sources of proteins, both for animal feed and direct human consumption. Food grade yeast, including Saccharomyces cerevisiae, has already been successfully used in industry. Here, we [...]
Experimentally altered rainfall regimes and host root traits affect grassland arbuscular mycorrhizal fungal communities
Published: 2019-07-29
Subjects: Biodiversity, Biology, Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Microbiology, Plant Sciences, Terrestrial and Aquatic Ecology
Future climate scenarios predict changes in rainfall regimes. These changes are expected to affect plants via effects on the expression of root traits associated with water and nutrient uptake. Associated microorganisms may also respond to these new precipitation regimes, either directly in response to changes in the soil environment or indirectly in response to altered root trait expression. We [...]
Temporal dynamics of mycorrhizal fungal communities and co-associations with grassland plant communities following experimental manipulation of rainfall
Published: 2019-07-29
Subjects: Biodiversity, Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Microbiology, Plant Sciences, Terrestrial and Aquatic Ecology
Climate models project overall a reduction in rainfall amounts and shifts in the timing of rainfall events in mid-latitudes and sub-tropical dry regions, which threatens the productivity and diversity of grasslands. Arbuscular mycorrhizal fungi may help plants to cope with expected changes but may also be impacted by changing rainfall, either via the direct effects of low soil moisture on [...]
Relationships between mycorrhizal type and leaf flammability in the Australian flora
Published: 2019-07-22
Subjects: Biodiversity, Botany, Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Evolution, Life Sciences, Microbiology, Plant Sciences
Mycorrhizal fungi have been linked to fire processes in natural ecosystems via their effects on litter decomposability but, to our knowledge, relationships between mycorrhizal fungi and leaf traits directly associated with aspects of flammability have not been studied. Here, we assessed the relationships among leaf traits and host mycorrhizal type for 77 species of Australian trees and shrubs to [...]
Resource allocation to growth or luxury consumption drives mycorrhizal responses
Published: 2019-07-17
Subjects: Biodiversity, Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Microbiology, Plant Biology, Plant Sciences
Highly variable phenotypic responses in mycorrhizal plants challenge our functional understanding of plant-fungal mutualisms. Using non-invasive high-throughput phenotyping, we observed that arbuscular mycorrhizal (AM) fungi relieved phosphorus (P) limitation and enhanced growth of Brachypodium distachyon under P-limited conditions, while photosynthetic limitation under low nitrogen (N) was [...]
Beneath the surface: community assembly and functions of the coral skeleton microbiome
Published: 2019-05-21
Subjects: Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Microbiology
Coral microbial ecology is a burgeoning field, driven by the urgency of understanding coral health and slowing reef loss due to climate change. Coral resilience depends on its microbiota, and both the tissue and the underlying skeleton are home to a rich biodiversity of eukaryotic, bacterial and archaeal species that form an integral part of the coral holobiont. New techniques now enable detailed [...]
Sexual Selection in Bacteria?
Published: 2019-05-08
Subjects: Bacteriology, Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Evolution, Genetics and Genomics, Life Sciences, Microbiology
A main mechanism of lateral gene transfer in bacteria is transformation, where cells take up free DNA from the environment which subsequently can be recombined into the genome. Bacteria are also known to actively release DNA into the environment through secretion or lysis, which could aid uptake via transformation. Various evolutionary benefits of DNA uptake and DNA release have been proposed but [...]
Cetacean morbillivirus, a journey from land to sea and viceversa
Published: 2019-01-15
Subjects: Immunology and Infectious Disease, Life Sciences, Medicine and Health Sciences, Microbiology, Virology
Cetacean Morbillivirus, the most relevant pathogen impacting the health and conservation of cetaceans worldwide, has shown in recent years an increased tendency to cross “interspecies barriers”, thereby giving rise to disease and mortality outbreaks in free-ranging dolphins and whales. This "Personal View" deals with the evolutionary “trajectories” of this viral pathogen, likely originating from [...]