Preprints
Filtering by Subject: Biology
Machine learning pipeline extracts biologically significant data automatically from avian monitoring videos
Published: 2022-03-08
Subjects: Behavior and Ethology, Biology, Ecology and Evolutionary Biology, Life Sciences
Measuring parental care behaviour in the wild is central to the study of animal life-history trade-offs, but is often labour and time-intensive. More efficient machine learning-based video processing tools have recently emerged that allow parental nest visit rates to be measured using video cameras and computer processing. Here, we used open-source software to detect movement events from videos [...]
How to enhance data FAIRness
Published: 2022-03-04
Subjects: Biology, Life Sciences
In recent years, we witnessed an increasing number of funding agencies, scientific journals and scientists agreeing that society and science benefit from open access to research data. Benefits derive mainly from increased access to knowledge for all and improved transparency in academia. However, despite the advances in open science and open data, three significant aspects still need considerable [...]
Drivers of community assembly change during succession in wood-decomposing insect communities
Published: 2022-02-18
Subjects: Biodiversity, Biology, Entomology, Life Sciences
1. The patterns of successional change of decomposer communities is unique in that resource availability predictably decreases as decomposition proceeds. Saproxylic (i.e., deadwood-dependent) beetles are a highly diverse and functionally important decomposer group, and their community composition is affected by both deadwood characteristics and other environmental factors. Understanding how [...]
Behavioural ecology at the spatial-social interface
Published: 2022-02-11
Subjects: Biology, Integrative Biology, Life Sciences
Spatial and social behaviour are fundamental aspects of an animal’s biology, and the social and spatial environments are indelibly linked through mutual causes and shared consequences. Behavioural variation at the “spatial-social interface”, which we define as the intersection of social and spatial aspects of individuals’ phenotypes and environments, has implications for ecological and [...]
The costs of abating threats to Australias biodiversity
Published: 2022-02-03
Subjects: Biology, Ecology and Evolutionary Biology, Environmental Sciences, Life Sciences, Natural Resources Management and Policy, Physical Sciences and Mathematics
1. Budgeting for biodiversity conservation requires realistic estimates of the costs of threat abatement. However, data on the costs of managing threats to biodiversity is often unavailable or unable to be extrapolated across relevant locations and scales due to a lack of transparency and consistency in how it was collated. Conservation expenditure largely occurs without a priori estimates costs [...]
A low-cost solution for documenting, tracking, and verifying cage-level animal husbandry tasks using wireless QR scanners and cloud-based spreadsheets
Published: 2022-02-03
Subjects: Animal Sciences, Animal Studies, Biology, Life Sciences, Social and Behavioral Sciences
Animal care is a critical component underlying successful behavioral and cognition experiments. Technological solutions for documentation and verification of care can aid in monitoring that activities are completed according to standard operating procedures and ensure that no individuals are overlooked. Here, I summarize a low-cost, flexible, and easy to use system that I developed to document [...]
Genomic evidence of a functional RH2 opsin in New Zealand parrots and implications for pest control
Published: 2022-01-25
Subjects: Biology, Ecology and Evolutionary Biology, Genetics and Genomics, Life Sciences
Recent genomic evidence suggest that kea (Nestor notabilis) have a non-functional RH2 opsin gene potentially leading to impaired vision in the green region of the electromagnetic spectrum. In New Zealand, it is standard procedure to add green dye to aerial poison baits used in mammalian predator control operations to deter native birds from eating toxic bait. A visual deficiency could impact how [...]
Microclimate shifts in nest-boxes and natural cavities before, during and after nesting
Published: 2022-01-17
Subjects: Animal Sciences, Biodiversity, Biology, Ecology and Evolutionary Biology, Life Sciences, Ornithology, Physiology, Population Biology
Animals breeding in anthropogenic shelters such as nest-boxes experience nesting environment in which they did not originally evolve. Over the past decades, they are additionally challenged by climate change – a major environmental force influencing their reproductive ecology. Despite the central importance of nesting microclimate for offspring development and fitness, very little is known about [...]
Plant community data from a statewide survey of paired serpentine and non-serpentine soils in California, USA
Published: 2022-01-13
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
Soils derived from ultramafic parent materials (hereafter serpentine) provide habitat for unique plant communities containing species with adaptations to the low nutrient levels, high magnesium: calcium ratios, and high metal content (Ni, Zn) that characterize serpentine. Plants on serpentine have long been studied in evolution and ecology, and plants adapted to serpentine contribute [...]
Latitudinal but not elevational variation in blood glucose level is linked to life history across passerine birds
Published: 2022-01-13
Subjects: Animal Sciences, Biology, Comparative and Evolutionary Physiology, Ecology and Evolutionary Biology, Evolution, Integrative Biology, Life Sciences, Physiology, Zoology
Macrophysiological research is vital to our understanding of mechanisms underpinning global life history variation and adaptation under diverse environments. Birds represent an important model taxon in this regard, yet our knowledge is limited to only a few physiological traits, mostly studied in temperate and Neotropical species. Here, we examined latitudinal and elevational variation in an [...]
Behavioral flexibility is manipulable and it improves flexibility and innovativeness in a new context
Published: 2022-01-05
Subjects: Behavior and Ethology, Biology, Ecology and Evolutionary Biology, Life Sciences
Behavioral flexibility, the ability to adapt behavior to new circumstances, is thought to play an important role in a species' ability to successfully adapt to new environments and expand its geographic range. However, flexibility is rarely directly tested in a way that would allow us to determine how flexibility works to predict a species' ability to adapt their behavior to new environments. We [...]
Ecogeography of group size suggests differences in drivers of sociality among cooperatively breeding fairywrens
Published: 2022-01-05
Subjects: Behavior and Ethology, Biology, Ecology and Evolutionary Biology, Evolution, Integrative Biology, Life Sciences
Cooperatively breeding species exhibit a range of social behaviors associated with different costs and benefits to group-living, often in association with different environmental conditions. For example, species in which collective-care of offspring reduces the cost of reproduction are more common in harsh environments (true cooperative breeding), while species that collectively defend resources [...]
State of the Amphibia 2020: A review of five years of amphibian research and existing resources
Published: 2021-12-15
Subjects: Biology, Life Sciences
Amphibians are a clade of over 8,400 species that provide unique research opportunities and challenges. With amphibians undergoing severe global declines, we posit that assessing our current understanding of amphibians is imperative. Focusing on the past five years (2016–2020), we examine trends in amphibian research, data, and systematics. New species of amphibians continue to be described at a [...]
Identifying cryptic fern gametophytes using DNA barcoding: A review
Published: 2021-12-14
Subjects: Biology, Ecology and Evolutionary Biology, Genetics and Genomics, Life Sciences, Plant Sciences
Ferns and lycophytes are unique among land plants for having sporophyte (diploid) and gametophyte (haploid) generations that can grow independently of each other. While most studies of fern ecology focus on the more obvious sporophytic stage, the gametophyte is critically important, as it is the sexual phase of the life cycle. Yet, fern gametophytes have long been neglected in field studies due [...]
Bothersome burrowers: tracking gopher (Thomomys bottae) time-averaging in a late-Holocene site in California
Published: 2021-12-04
Subjects: Biology, Integrative Biology, Life Sciences
Understanding the taphonomic biases affecting fossil deposits is necessary in order to extract their true ecological signals. In terrestrial sites, the mixing of fossil material by mammalian bioturbators can substantially increase time-averaging, obscuring or even erasing stratification. In particular, pocket gophers (Thomomys sp.) are known to burrow in Holocene sites and thereby complicate the [...]