Preprints
Filtering by Subject: Biodiversity
Deep reticulation: the long legacy of hybridization in vascular plant evolution
Published: 2022-10-26
Subjects: Biodiversity, Botany, Ecology and Evolutionary Biology, Evolution, Life Sciences, Plant Biology, Plant Sciences
Hybridization has long been recognized as a fundamental evolutionary process in plants, but our understanding of its phylogenetic distribution and biological significance across deep evolutionary scales has been largely obscure—until recently. Over the past decade, genomic and phylogenomic datasets have revealed, perhaps not surprisingly, that hybridization, often associated with polyploidy, has [...]
Discovering the rules of plant biogeography using a trait-based approach
Published: 2022-09-30
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences
Lineage-specific traits determine how plants interact with their surrounding environment. As different species may find similar phenotypic solutions through evolution to tolerate, persist in and invade environments with certain characteristics, some traits may become more common in certain types of habitats. These general patterns of geographical trait distribution point towards the existence of [...]
Distribution and Variability of Cistanthe philhershkovitziana Hershk. (Cistanthe sect. Cistanthe; Montiaceae)
Published: 2022-09-29
Subjects: Biodiversity, Life Sciences
The present work exploits internet resources to update previously reported data for the distributional range and ecology of Cistanthe philhershkovitziana Hershk. (Cistanthe Spach sect. Cistanthe; Montiaceae), a conspicuous and not uncommon species of central and north-central Chile. The latitudinal range documented here is at least 4.8° greater than previously reported, extending from ca. 29°S [...]
Individual-based eco-evolutionary framework: towards unifying ecology and evolution
Published: 2022-09-28
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences
Evolution is increasingly found to be rapid and entangled with ecological processes in complex eco-evolutionary dynamics, calling for a common conceptual framework. Yet, ecological and evolutionary theory remain largely separated, which constrains the development of integrative research. To overcome this separation, I argue for treating the entangled dynamics as a single eco-evolutionary process [...]
Stable laws in a changing world The structure of evolutionary theories over the centuries
Published: 2022-09-27
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
Successful fundamental theories are built on verifiable principles that include measurable variables. This paper shows that Darwin’s inclusive theory is built on such principles and follows their rocky road into modern operational theories. Besides reproduction, variation, and heredity, Darwin’s conditions of diversification also include the potential for exponential (geometric) population growth [...]
Causal inference and large-scale expert validation shed light on the drivers of SDM accuracy and variance
Published: 2022-09-21
Subjects: Biodiversity, Life Sciences
1. The literature is awash with studies purporting to show how various species and data characteristics affect the performances of Species Distribution Models (SDMs). Many of these studies follow a similar template: they fit SDMs for several species, or the same species using different datasets; assess the accuracy of those SDMs using skill statistics; and then identify correlates thereof. [...]
New Global Species Biodiversity: Soil soars, Ocean flounders
Published: 2022-09-16
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Population Biology
Based on topographic field data, an argument is advanced that Soil houses ~2.1 x 10^24 taxa and supports >99.9% of global species biodiversity, mostly Bacteria or other microbes. Contradictory claims that Soil is home to only a quarter of biota while Ocean harbours 80-99% of Life on Earth are both dismissed. Earlier guesstimates of ~8.8 million taxa (~2.2 million or 25% marine), of 1-6 [...]
Realising the potential of real-time online monitoring for conservation culturomics
Published: 2022-09-09
Subjects: Biodiversity, Ecology and Evolutionary Biology, Environmental Studies, Life Sciences, Other Ecology and Evolutionary Biology, Social and Behavioral Sciences
Environmental monitoring is increasingly shifting towards a set of systems that describe changes in real-time. In ecology specifically, a series of challenges have prevented the roll-out of real-time monitoring for features such as biodiversity change or ecosystem service provision. Conservation culturomics, a field concerned with interactions between people and nature, is well-placed to [...]
Sampling strategy matters to accurately estimate response curves’ parameters in species distribution models
Published: 2022-08-27
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Other Life Sciences, Plant Sciences
Aim: Assessing how different sampling strategies affect the accuracy and precision of species response curves estimated by parametric Species Distribution Models. Major taxa studied: Virtual plant species. Location: Abruzzo (Italy). Time period: Timeless (simulated data). Methods: We simulated the occurrence of two virtual species with different ecology (generalist vs specialist) and [...]
The courage of hopelessness: a transformative change for conservation sciences
Published: 2022-07-29
Subjects: Biodiversity, Ecology and Evolutionary Biology, Environmental Studies, Life Sciences, Social and Behavioral Sciences
As the twenty-first century unfolds, the human-driven decline of life on Earth is of greater concern and, despite tremendous growth in the volume of conservation science and many local successes, shows no clear signs of improvement. As a matter of fact, the reversal of nature’s ongoing decline is only possible with urgent “transformative change” However, no transformative changes are viable [...]
Draft for Open Consultation. The Amphibian Conservation Action Plan (ACAP): A status review and roadmap for global amphibian conservation.
Published: 2022-07-18
Subjects: Animal Sciences, Biodiversity, Life Sciences, Other Animal Sciences
As the most threatened vertebrate class on earth, amphibians are at the forefront of the biodiversity crisis, with the start of global amphibian declines and extinctions dating back several decades now. The Amphibian Conservation Action Plan (ACAP), the first taxonomic class-level plan of its kind, was first published in 2007 and then updated as a digital resource in 2015, with the goal of acting [...]
fundiversity: a modular R package to compute functional diversity indices
Published: 2022-07-18
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology, Research Methods in Life Sciences
1. Functional diversity is widely used and widespread. However, the main package used to compute functional diversity indices FD is not flexible and not adapted to the volume of data used in modern ecological analyses. 2. We here present fundiversity, an R package that eases the computation of classical functional diversity indices. It leverages parallelization and memoization (caching results [...]
The role of genomics in the future of Endangered Species Act decision-making
Published: 2022-07-14
Subjects: Biodiversity, Ecology and Evolutionary Biology, Genetics and Genomics, Life Sciences
The U.S. Endangered Species Act (ESA) provides a framework for the protection and recovery of threatened and endangered species and their habitats in the face of anthropogenic threats. Genetic information has played a role in decision-making under the ESA for decades, most commonly informing taxonomy and the designation of distinct population segments, though detection of inbreeding also played [...]
High tolerance to zinc but no evidence for local adaptation in the aquatic plant Lemna minor
Published: 2022-07-05
Subjects: Biodiversity, Botany, Life Sciences, Plant Sciences
Duckweeds are a widely distributed and economically important aquatic plant family that have high potential for phytoremediation of polluted water bodies. We collected four ecotypes of the common duckweed (Lemna minor) from the four corners of Switzerland and assessed how their home vs. away environments influenced their growth. Additionally, we investigated their response to a metal pollutant [...]
The coevolutionary mosaic of bat betacoronavirus emergence risk
Published: 2022-07-01
Subjects: Biodiversity, Bioinformatics, Biology, Biotechnology, Cell and Developmental Biology, Ecology and Evolutionary Biology, Immunology and Infectious Disease, Life Sciences, Other Ecology and Evolutionary Biology, Other Life Sciences
Pathogen evolution is one of the least predictable components of disease emergence, particularly in nature. Here, building on principles established by the geographic mosaic theory of coevolution, we develop a quantitative, spatially-explicit framework for mapping the evolutionary risk of viral emergence. Driven by interest in diseases like SARS, MERS, and COVID-19, we examine the global [...]