Preprints
Filtering by Subject: Life Sciences
Characterizing the Vector Data Ecosystem
Published: 2022-08-06
Subjects: Entomology, Life Sciences, Research Methods in Life Sciences
A growing body of information on vector-borne diseases has arisen as increasing research focus has been directed towards the need for anticipating risk, optimizing surveillance, and understanding the fundamental biology of vector-borne diseases to direct efforts to control and mitigation. The scope and scale of this information, in the form of data, comprising database efforts, data storage, and [...]
First recorded outbreak of Veronaea botryosa in North American amphibians: clinicopathologic features of a rare cause of phaeohyphomycosis in captive White’s tree frogs (Litoria caerulea)
Published: 2022-08-05
Subjects: Life Sciences, Medicine and Health Sciences, Physical Sciences and Mathematics, Veterinary Infectious Diseases, Veterinary Medicine
We describe fatal phaeohyphomycosis due to Veronaea botryosa in captive White’s tree frogs (Litoria caerulea), the first confirmed report in amphibians in North America. Over 15 months, six frogs developed ulcerative dermatitis on distal extremities/ventrum, which in one animal progressed to vasculitis and necrotizing osteomyelitis. All six frogs died. Clinicopathologic findings, diagnostic [...]
The IUCN Red List is not sufficient to protect genetic diversity
Published: 2022-08-02
Subjects: Ecology and Evolutionary Biology, Life Sciences
The International Union for Conservation of Nature (IUCN) Red List is an important and widely used conservation prioritization tool. It uses information about species range size, habitat quality and fragmentation levels, and trends in abundance to assess species extinction risk. Genetic erosion is an additional key factor determining extinction risk, but the Red List was not designed to assess [...]
Experimental validation of transposable element insertions using the Polymerase Chain Reaction (PCR)
Published: 2022-07-31
Subjects: Biology, Ecology and Evolutionary Biology, Evolution, Life Sciences
Transposable elements (TEs), also known as transposons, are repetitive DNA sequences, present in virtually all organisms, that can move from one genomic position to another. TEs can be a source of mutations with important consequences for organisms. Despite their interest, its repetitive nature has made their study very challenging. However, the emergence of new sequencing technologies that allow [...]
The courage of hopelessness: a transformative change for conservation sciences
Published: 2022-07-30
Subjects: Biodiversity, Ecology and Evolutionary Biology, Environmental Studies, Life Sciences, Social and Behavioral Sciences
As the twenty-first century unfolds, the human-driven decline of life on Earth is of greater concern and, despite tremendous growth in the volume of conservation science and many local successes, shows no clear signs of improvement. As a matter of fact, the reversal of nature’s ongoing decline is only possible with urgent “transformative change” However, no transformative changes are viable [...]
Female preferences for higher vocal effort in Neotropical singing mice
Published: 2022-07-30
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Life Sciences
Despite the importance of vocalizations in mammalian sociosexual communication, little is known about female preferences for male vocal displays in wild mammals. Here, we characterized female preferences for the advertisement songs of male Alston’s singing mice (Scotinomys teguina). We developed procedures for inducing estrus, using vaginal morphology as a bioindicator. We then broadcasted [...]
European light skin may have evolved as an adaptation to the Neolithic sedentary lifestyle
Published: 2022-07-28
Subjects: Bioinformatics, Biology, Ecology and Evolutionary Biology, Evolution, Life Sciences, Population Biology
Light skin facilitates the penetration of ultraviolet light (UV) radiation through the skin, increasing the synthesis of vitamin D that in turn stimulates bone formation. It has been suggested that light skin appeared in the ancestors of modern Europeans as an adaptation to the conditions of low UV radiation in high latitudes; however, paleogenetic studies have recently shown it did not evolve [...]
Generation and applications of simulated datasets to integrate social network and demographic analyses
Published: 2022-07-27
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Life Sciences, Population Biology
Social networks are tied to population dynamics; interactions are driven by population density and demographic structure, while social relationships can be key determinants of survival and reproductive success. However, difficulties integrating models used in demography and network analysis have limited research at this interface. We introduce the R package genNetDem for simulating integrated [...]
Effects of helicopter skiing on mountain goats and woodland caribou in British Columbia
Published: 2022-07-26
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
Helicopter skiing is a popular adventure tourism activity that occurs within the range of mountain goats (Oreamnos americanus) and/or woodland caribou (Rangifer tarandus caribou) in British Columbia and, to a lesser extent in adjacent jurisdictions. Both are species of concern, with known or suspected population declines occurring in substantial portions of their respective ranges. Whether [...]
Shared neural transcriptomic patterns underlie the repeated evolution of mutualistic cleaning behavior in Labridae wrasses
Published: 2022-07-26
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Despite the remarkable diversity of life forms on earth, evolutionary biologists have discovered numerous instances where even distantly related species share astonishing similarities in how they behave, look, and function. Given the importance of happenstance in evolution (e.g., random mutations, genetic drift, environmental stochasticity), it is often assumed that the mechanisms underlying such [...]
Effect of Forest Understorey Stand Density on Woodland Caribou Habitat Use
Published: 2022-07-22
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
Woodland caribou are considered to preferentially use older forests that provide abundant terrestrial lichen forage and refuge from predators. However, structural characteristics vary widely, differing in terms of forage availability but also, perhaps, in the ability of caribou to move freely through forests to access the available forage or to escape predation. We examined the effect of forest [...]
Social manipulations trigger shifts in group-level dominance patterns
Published: 2022-07-21
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Life Sciences
Recent computational approaches discovered group-level patterns within dominance hierarchies which are based on relative rank differences between individuals. Within species, groups could follow different dominance patterns, indicating these patterns could be group- rather than species-specific traits. Moreover, these patterns differ in complexity, with some requiring an individual to access more [...]
Draft for Open Consultation. The Amphibian Conservation Action Plan (ACAP): A status review and roadmap for global amphibian conservation.
Published: 2022-07-18
Subjects: Animal Sciences, Biodiversity, Life Sciences, Other Animal Sciences
As the most threatened vertebrate class on earth, amphibians are at the forefront of the biodiversity crisis, with the start of global amphibian declines and extinctions dating back several decades now. The Amphibian Conservation Action Plan (ACAP), the first taxonomic class-level plan of its kind, was first published in 2007 and then updated as a digital resource in 2015, with the goal of acting [...]
fundiversity: a modular R package to compute functional diversity indices
Published: 2022-07-18
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology, Research Methods in Life Sciences
1. Functional diversity is widely used and widespread. However, the main package used to compute functional diversity indices FD is not flexible and not adapted to the volume of data used in modern ecological analyses. 2. We here present fundiversity, an R package that eases the computation of classical functional diversity indices. It leverages parallelization and memoization (caching results [...]
Social niche shapes social behavior and cortisol concentrations during adolescence in female guinea pigs
Published: 2022-07-16
Subjects: Behavior and Ethology, Biology, Ecology and Evolutionary Biology, Life Sciences
Individualized social niches arise in social groups and are associated with behavior and hormone (e.g. cortisol) concentrations. During sensitive life phases, social interactions can have a profound impact on the development of social behavior. Focusing on adolescence, we aimed to investigate the relationship between the social niche, social behavior, and cortisol concentrations (baseline and [...]