This is a Preprint and has not been peer reviewed. The published version of this Preprint is available: https://doi.org/10.1111/jeb.14230. This is version 7 of this Preprint.
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Abstract
Code review increases reliability and improves reproducibility of research. As such, code review is an inevitable step in software development and is common in fields such as computer science. However, despite its importance, code review is noticeably lacking in ecology and evolutionary biology. This is problematic as it facilitates the propagation of coding errors and a reduction in reproducibility and reliability of published results. To address this, we provide a detailed commentary on how to effectively review code, how to set up your project to enable this form of review and detail its possible implementation at several stages throughout the research process. This guide serves as a primer for code review, and adoption of the principles and advice here will go a long way in promoting more open, reliable, and transparent ecology and evolutionary biology.
DOI
https://doi.org/10.32942/X2CG64
Subjects
Life Sciences
Keywords
reliability, reproducibility, software development, coding errors, research process, open science, transparency, reproducibility, software development, coding errors, research process, open science, transparency
Dates
Published: 2023-05-16 18:08
Last Updated: 2023-10-11 23:41
Older Versions
- Version 6 - 2023-08-15
- Version 5 - 2023-08-09
- Version 4 - 2023-05-17
- Version 3 - 2023-05-16
- Version 2 - 2023-05-16
- Version 1 - 2023-05-16
License
CC-BY Attribution-No Derivatives 4.0 International
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Language:
English
Conflict of interest statement:
None
Data and Code Availability Statement:
Not applicable
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