ausplotsR: An R package for rapid extraction and analysis of vegetation and soil data collected by Australia’s Terrestrial Ecosystem Research Network

This is a Preprint and has not been peer reviewed. The published version of this Preprint is available: https://doi.org/10.1111/jvs.13046. This is version 2 of this Preprint.

Downloads

Download Preprint

Authors

Samantha Munroe, Greg Guerin, Tom Saleeba, Irene Martín-Forés, Bernardo Blanco-Martin, Ben Sparrow, Andrew Tokmakoff

Abstract

The Terrestrial Ecosystem Research Network (TERN), Australia’s national land ecosystem monitoring program, measures critical environmental attributes from local to continental scale and generates quality data for research and land management. Since 2011, TERN has performed standardised field surveys and sampling across a national plot network. At each plot, TERN records vegetation structure, composition and diversity, soil characteristics, and collects plant and soil samples for analysis. At the time of submission, TERN has established over 750 plots and performed over 1000 plot surveys across Australia. Here we present ausplotsR, an R package for the R statistical computing environment that provides a user-friendly interface to rapidly import, visualise, and analyse TERN plot survey data. Easy-to-use functions extract the data and compile data tables that can be incorporated into a variety of statistical analysis, most notably multivariate applications requiring plant community data with standardised relative abundances. ausplotsR includes functions to calculate useful vegetation metrics, such as species presence/absence, cover, and basal area. The package also provides information on TERN’s extensive soil and plant sample collection. We expect ausplotsR will help facilitate and advance ecological research and management throughout Australia and provide useful data for vegetation modellers globally.

DOI

https://doi.org/10.32942/osf.io/25phx

Subjects

Biostatistics, Botany, Life Sciences, Other Plant Sciences, Physical Sciences and Mathematics, Plant Biology, Plant Sciences, Statistics and Probability

Keywords

Australia, big data, biodiversity, ecosystem monitoring, environmental modelling, plot survey, R statistical environment, TERN, Terrestrial Ecosystem Research Network

Dates

Published: 2020-12-15 06:00

Last Updated: 2021-03-23 01:19

Older Versions
License

CC-By Attribution-ShareAlike 4.0 International

Add a Comment

You must log in to post a comment.


Comments

There are no comments or no comments have been made public for this article.