Preprints
Filtering by Subject: Genetics
Lactate Dehydrogenase as a Candidate Genomic Marker of Climate Change in Mammals?
Published: 2026-07-13
Subjects: Bioinformatics, Comparative and Evolutionary Physiology, Evolution, Genetics, Genomics, Molecular Genetics, Other Ecology and Evolutionary Biology, Population Biology
Climate change imposes metabolic and thermal stress on mammals, yet genomic markers that track lineage specific adaptation remain limited. Lactate dehydrogenase (LDH), a central enzyme in lactate metabolism and anaerobic stress response, has not previously been evaluated for its evolutionary association with climate change induced selection. Here, comparative genomics across 14 mammalian species [...]
Taming the dragon: genetic variation in wild and domesticated Antirrhinum majus
Published: 2026-06-30
Subjects: Botany, Genetics, Genetics and Genomics, Horticulture, Life Sciences, Plant Sciences
Domesticated species and their wild relatives provide powerful case studies for examining the processes that shape rapid diversification. Here, we conduct a population genetic analysis of 31 domesticated varieties and 33 natural populations of the common snapdragon, Antirrhinum majus, a species in which closely related flower colour varieties form hybrid zones and display extensive variation in [...]
Soma as transmission control in multicellular evolution: a population-genetic framework for germline restriction and cellular altruism
Published: 2026-06-08
Subjects: Genetics, Integrative Biology, Life Sciences, Other Ecology and Evolutionary Biology
A central question in the evolution of multicellularity is why lineages repeatedly transition from germ-dominated unicellular states to organizations with extensive somatic investment. If somatic cells are largely excluded from future generations, why are they produced at all, and why do soma-free multicellular alternatives appear limited in stability, persistence, or attainable complexity? Here, [...]
Evaluating the potential of molecular dietary analysis of predators for the detection of emerging plant pests
Published: 2026-06-01
Subjects: Agriculture, Behavior and Ethology, Biodiversity, Biosecurity, Ecology and Evolutionary Biology, Entomology, Forest Biology, Forest Management, Forest Sciences, Genetics, Laboratory and Basic Science Research Life Sciences, Life Sciences, Research Methods in Life Sciences
Monitoring plant pests is crucial for maximising yields across agricultural and forest production systems, but also for the mitigation of invasive species spread. Traditional monitoring methods, such as mass trapping and direct observation, scale poorly and introduce latency between collection, detection and response. Since many plant pests are frequently consumed by predators, molecular dietary [...]
What is the human germline mutation rate? methodological innovations, challenges, and evolutionary implications
Published: 2026-04-08
Subjects: Ecology and Evolutionary Biology, Evolution, Genetics, Genetics and Genomics, Life Sciences
Germline mutations are the ultimate source of heritable genetic variation, driving evolution, enabling adaptation, and underlying disease. Despite their fundamental importance, key questions remain unanswered: How frequently do germline mutations arise? Do mutation rates vary systematically across individuals, populations, and local genomic context? And what determines whether a mutation arising [...]
Genetic variance and phenotypic selection on pathogen-linked oviposition choice in Drosophila
Published: 2026-03-23
Subjects: Animal Experimentation and Research, Behavior and Ethology, Entomology, Evolution, Genetics, Integrative Biology, Research Methods in Life Sciences, Zoology
Pathogen-avoidance behaviour is assumed to be adaptive, yet its phenotypic variability and genetic heritability are rarely quantified. In species lacking post-oviposition care, avoiding potentially infectious egg-laying substrates would improve offspring survival and should therefore be under strong selection. We used two-choice oviposition assays to quantify the phenotypic and genetic variance [...]
From Trading Genes to Crafting New Tricks: How Horizontal Gene Transfer Potentiates the Emergence of Novel Functions
Published: 2026-03-17
Subjects: Evolution, Genetics, Genomics, Microbiology
Horizontal gene transfer (HGT), the set of processes by which genetic information is transferred between individuals, has shaped life’s evolution. It is particularly frequent in microbial organisms, where it has driven numerous remarkable adaptations to extreme conditions, anti-microbial agents, or biotic interactions. Its role in spreading novel functions is now documented by countless examples [...]
Transposable elements as drivers of reproductive isolation: A framework for testing hybridization-induced escalation of genetic conflicts
Published: 2026-02-26
Subjects: Evolution, Genetics, Genomics, Other Ecology and Evolutionary Biology
Contrary to long-held views, the exchange of genetic diversity between species by hybridization is now recognized as an important process contributing to the evolution of biodiversity. However, hybridization has molecular consequences beyond the exchange of genetic variation. The clash of divergent genomes upon hybridization can escalate genetic conflicts previously resolved in parental species – [...]
The interplay between epigenetic mechanisms and deleterious mutations: implications for fitness, evolution and conservation
Published: 2026-01-13
Subjects: Biology, Ecology and Evolutionary Biology, Genetics, Genetics and Genomics, Genomics, Life Sciences, Molecular Genetics
Understanding the causal effects of genetic mutations is essential for explaining fitness variation, forecasting evolutionary trajectories and assessing extinction risk, yet remains a fundamental challenge, particularly in natural populations. While amino acid substitutions can alter protein structure and function, mutations affecting gene regulation can also have significant fitness [...]
The weak driver conundrum: data archiving and biological phenomena impact macrogenetic findings
Published: 2025-12-10
Subjects: Biodiversity, Evolution, Genetics, Genomics, Other Ecology and Evolutionary Biology
Macrogenetics seeks to identify the global drivers and patterns in intraspecific genetic diversity, yet many reported patterns are weak or inconsistent. To achieve multispecies global inference, many macrogenetic studies leverage open sequencing data that can suffer from archiving biases. It remains unclear if macrogenetic inconsistencies are innate genetic phenomena, or are the product of open [...]
How much monitoring is needed to reliably track progress towards genetic diversity targets?
Published: 2025-11-06
Subjects: Biodiversity, Ecology and Evolutionary Biology, Genetics, Population Biology
Achieving global biodiversity targets hinges on indicators of biodiversity change that convert raw data into reliable numbers that can shape policy, conservation, management, and, ultimately, the future of biodiversity worldwide. Indicators can only be used confidently if they detect and summarise biodiversity trends as intended, given the available data worldwide. Knowing whether indicators can [...]
What fraction of the genomic basis of local adaptation are we missing?
Published: 2025-10-05
Subjects: Ecology and Evolutionary Biology, Evolution, Genetics, Genetics and Genomics, Life Sciences
How will species adapt to changing environments? To what extent does adaptation to previous conditions maintain the variation needed to adapt to future conditions? To answer these kinds of questions, we need to identify locally adaptive alleles and quantify their effects. Theory shows that the architecture of adaptation can depend upon the nature of mutation and on how ecology shapes the [...]
Microevolutionary Responses to Seasonality Contribute to the Latitudinal Biodiversity Gradient
Published: 2025-07-22
Subjects: Evolution, Genetics, Population Biology
The latitudinal gradient in species richness is one of ecology’s oldest observed patterns, yet the mechanisms maintaining it remain debated. One prominent explanation links seasonality to the evolution of broad physiological tolerances, creating evolutionary conditions that impede population divergence and speciation. We tested whether seasonality leaves detectable signatures in the genetic [...]
IQ2MC: A New Framework to Infer Phylogenetic Time Trees Using IQ-TREE 3 and MCMCTree with Mixture Models
Published: 2025-05-05
Subjects: Bioinformatics, Computational Biology, Ecology and Evolutionary Biology, Evolution, Genetics, Genetics and Genomics, Genomics, Life Sciences
IQ-TREE and MCMCTree are two widely used phylogenetic tools to infer phylogenetic trees and estimate divergence times, respectively. As MCMCTree performs fast approximate Markov Chain Monte Carlo sampling to obtain the times along a fixed tree topology, it would be natural to use IQ-TREE to obtain the tree. However, it is currently not possible to integrate these tools seamlessly, as MCMCTree [...]
Plant genomic variation and its implications for proposed EU NGT legislation
Published: 2025-04-09
Subjects: Biotechnology, Ecology and Evolutionary Biology, Evolution, Genetics, Genetics and Genomics, Genomics, Life Sciences, Molecular Genetics, Plant Breeding and Genetics Life Sciences, Plant Sciences
The European Commission proposal for New Genomic Techniques (NGTs) of July 2023 specifies that NGT1 plants, which are considered equivalent to conventional plants, may differ from the recipient or parental plant by no more than 20 insertions, which cannot be longer than 20 bp; deletions can be of any size and number. Here, we examine the proposed 20/20 NGT1 limit against the background of the [...]