Preprints
Filtering by Subject: Botany
Earlier and increased growth of tundra willows after a decade of growth in a warmer common garden environment
Published: 2024-11-08
Subjects: Biology, Botany, Ecology and Evolutionary Biology, Life Sciences, Plant Biology, Plant Sciences, Terrestrial and Aquatic Ecology
1. The expansion of woody shrubs, known as shrubification, is one of the most widely observed patterns of vegetation change in the tundra. Yet, we do not know the relative importance of plant plasticity and genetic change in determining shrub responses to warming. Plastic responses to the environment can be rapid, while genetic differentiation is much slower. 2. We established a common garden [...]
Beyond single invaders: Disentangling the effects of co-invading alien herbs on sandy old-fields
Published: 2024-10-27
Subjects: Biodiversity, Botany, Ecology and Evolutionary Biology
Aims Invasive alien plants can severely impact ecosystem diversity and function. While individual species’ effects are often studied, the interaction between multiple invasive species is less understood. This study examines how Asclepias syriaca and Solidago spp. (including Solidago gigantea and S. canadensis) influence taxonomic and functional diversity in sandy old-fields. The aims are to: (1) [...]
Collapse and recovery of livestock systems shape fire regimes on the Eurasian steppe: a review of ecosystem and biodiversity implications
Published: 2024-09-04
Subjects: Biodiversity, Botany, Natural Resources and Conservation, Plant Sciences, Sustainability
Shifts in fire regimes can trigger rapid changes in ecosystem functioning and biodiversity. We synthesize evidence for patterns, causes and consequences of recent change in fire regimes across the Eurasian steppes, a neglected global fire hotspot. Political and economic turmoil following the break-up of the Soviet Union in 1991 triggered abrupt land abandonment over millions of hectares and a [...]
The Genomics for Australian Plants (GAP) framework initiative – developing genomic resources for understanding the evolution and conservation of the Australian flora.
Published: 2024-07-08
Subjects: Biodiversity, Botany, Genomics
The generation and analysis of genome-scale data—genomics—is driving a rapid increase in plant biodiversity knowledge. However, the speed and complexity of technological advance in genomics presents challenges for its widescale use in evolutionary and conservation biology. Here, we introduce and describe a national-scale collaboration conceived to build genomic resources and capability for [...]
Navigating phylogenetic conflict and evolutionary inference in plants with target capture data
Published: 2024-05-27
Subjects: Bioinformatics, Biology, Botany, Ecology and Evolutionary Biology, Evolution, Life Sciences, Plant Sciences, Research Methods in Life Sciences
Target capture has quickly become a preferred approach for plant systematic and evolutionary research, marking a step-change in the generation of data for phylogenetic inference. While this advancement has facilitated the resolution of many phylogenetic relationships, phylogenetic conflict continues to be reported, and often attributed to genome duplication, reticulation, deep coalescence or [...]
Incomplete lineage sorting and hybridization underlie of tree discordance in Petunia and related genera (Petunieae, Solanaceae)
Published: 2024-03-29
Subjects: Biodiversity, Bioinformatics, Botany, Genomics
Despite the overarching history of species divergence, phylogenetic studies often reveal distinct topologies across regions of the genome. The sources of these gene tree discordances are variable, but incomplete lineage sorting (ILS) and hybridization are among those with the most biological importance. Petunia serves as a classic system for studying hybridization in the wild. While field studies [...]
Sexual system variation in legumes (Leguminosae): underpinning genomic study with new tools to describe inflorescence morphology
Published: 2024-02-01
Subjects: Biology, Botany, Plant Biology, Plant Breeding and Genetics Life Sciences, Plant Sciences
Although the great majority of legume species are cosexual with hermaphrodite flowers, a variety of sexual systems are observed in the family, including monoecy, andromonoecy, androdioecy and dioecy. Such broad terms conceal much variation, details that may be of importance in understanding the evolutionary and ecological basis of reproductive systems. This variation is often inadequately [...]
Extinction drives recent thermophilization but does not trigger homogenization in forest understory
Published: 2023-07-05
Subjects: Botany, Forest Sciences, Life Sciences, Terrestrial and Aquatic Ecology
The ongoing climate change is triggering plant community thermophilization. This selection process is ought to shift community composition toward species adapted to warmer climates but may also lead to biotic homogenization. The link between thermophilization and homogenization, and the community dynamics that drive them (colonization and extinction) remain unknow, but is critical for [...]
Evolutionary origins of the Mesoamerican-eastern United States floristic disjunction: current status and future prospects
Published: 2022-11-07
Subjects: Biodiversity, Biology, Botany, Ecology and Evolutionary Biology, Evolution, Life Sciences, Plant Sciences
Biogeographic disjunction patterns, where multiple taxonomic groups are shared between isolated geographic areas, represent excellent systems for investigating the historical assembly of modern biotas as well as fundamental biological processes such as speciation, diversification, niche evolution, and evolutionary responses to climate change. Studies on plant genera disjunct across the Northern [...]
Deep reticulation: the long legacy of hybridization in vascular plant evolution
Published: 2022-10-26
Subjects: Biodiversity, Botany, Ecology and Evolutionary Biology, Evolution, Life Sciences, Plant Biology, Plant Sciences
Hybridization has long been recognized as a fundamental evolutionary process in plants, but our understanding of its phylogenetic distribution and biological significance across deep evolutionary scales has been largely obscure—until recently. Over the past decade, genomic and phylogenomic datasets have revealed, perhaps not surprisingly, that hybridization, often associated with polyploidy, has [...]
When and how does photoinhibition matter for plant fitness?
Published: 2022-09-13
Subjects: Botany, Ecology and Evolutionary Biology, Life Sciences, Physiology, Plant Biology, Plant Sciences, Population Biology, Terrestrial and Aquatic Ecology
The many biophysical factors that shape how plant species sort across environmental gradients may include photoinhibition, which I define broadly as oxidative damage that plants and other phototrophs risk incurring when they absorb excess light energy they cannot safely dissipate. Photoinhibition is seldom explicitly discussed as a potential driver of plant fitness and distributions. Here, I aim [...]
Heterostyly on Japanese Islands
Published: 2022-09-07
Subjects: Botany, Life Sciences, Plant Sciences
Heterostyly is a genetically controlled floral polymorphism that promote outbreeding. Although many studies on heterostyly have been done in Japan, there have been no comprehensive analysis nor review. Here I present the list of heterostyly in the native flora of Japan through reviewing references. By using this list, I tested the difference in occurrence of heterostylous species among subgroups [...]
High tolerance to zinc but no evidence for local adaptation in the aquatic plant Lemna minor
Published: 2022-07-05
Subjects: Biodiversity, Botany, Life Sciences, Plant Sciences
Duckweeds are a widely distributed and economically important aquatic plant family that have high potential for phytoremediation of polluted water bodies. We collected four ecotypes of the common duckweed (Lemna minor) from the four corners of Switzerland and assessed how their home vs. away environments influenced their growth. Additionally, we investigated their response to a metal pollutant [...]
The Global Forest Health Crisis: A Public Good Social Dilemma in Need of International Collective Action
Published: 2022-03-11
Subjects: Agricultural and Resource Economics, Agricultural Economics, Agricultural Science, Agriculture, Behavioral Economics, Biodiversity, Biology, Biosecurity, Botany, Economics, Entomology, Environmental Microbiology and Microbial Ecology Life Sciences, Environmental Studies, Forest Biology, Forest Management, Forest Sciences, International Relations, Life Sciences, Microbiology, Other Forestry and Forest Sciences, Other Plant Sciences, Pathogenic Microbiology, Plant Biology, Plant Pathology, Plant Sciences, Political Science, Science and Technology Studies, Social and Behavioral Sciences
Society is confronted by interconnected threats to ecological sustainability. Among these is the devastation of forests by destructive non-native pathogens and insects introduced through global trade, leading to the loss of critical ecosystem services and a global forest health crisis. We argue that the forest health crisis is a public good social dilemma and propose a response framework that [...]
Understanding plant microbiomes requires a G x E framework
Published: 2021-05-20
Subjects: Biodiversity, Botany, Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Microbiology, Plant Breeding and Genetics Life Sciences, Plant Sciences, Terrestrial and Aquatic Ecology
Plant microbiomes have become one of the hottest topics in plant biology. Driven by the increased availability of metagenome sequencing methods, analyses of plant-associated microbiomes have been skyrocketing during the last decade. They have generally taken one of two main perspectives: (1) a focus on the microbiome itself, where researchers describe microbiome diversity and attempt to [...]