Preprints
Filtering by Subject: Plant Biology
CartograPlant: Bridging genomic, phenotypic, and environmental data to advance plant resilience and eco-evolutionary insight
Published: 2025-09-30
Subjects: Agriculture, Biodiversity, Bioinformatics, Ecology and Evolutionary Biology, Genetics and Genomics, Integrative Biology, Life Sciences, Plant Biology, Plant Breeding and Genetics Life Sciences, Plant Pathology, Systems Biology
Climate change is threatening plant health and productivity at all spatial scales, and these impacts are further compounded by the rising incidence of invasive pests and pathogens. Effectively addressing these challenges requires a comprehensive understanding of plant demography as well as the mechanisms and drivers of adaptation. Achieving this understanding requires the integration of [...]
Alternative Promoters Expand Transcriptional Complexity of Temperature Stress Responses in Cassava
Published: 2025-09-29
Subjects: Agriculture, Bioinformatics, Genetics and Genomics, Genomics, Plant Biology, Plant Sciences
Plant abiotic stress responses involve two major gene expression regulatory mechanisms: alternative promoter usage and differential expression. Although differentially expressed genes (DEGs) have been extensively studied, alternative promoter genes (APGs) remain poorly characterized despite their potential importance. We systematically compared APGs and DEGs in cassava (Manihot esculenta), a [...]
Herbarium specimens reveal long-term decline in pollination services since in the 1970s
Published: 2025-08-22
Subjects: Biodiversity, Botany, Ecology and Evolutionary Biology, Environmental Monitoring, Natural Resources and Conservation, Other Ecology and Evolutionary Biology, Plant Biology, Plant Sciences
Anthropogenic change has resulted in pollinator decline and altered plant-pollinator interactions. This may drive widespread declines in pollination and reproductive success of plants, yet few datasets allow us to track changes in pollination services over time. Herbaria provide a unique opportunity to assess pollination services across broad spatial and temporal scales, and the associated [...]
Changes in pollen production, pollen heteromorphism and ovule production with increased selfing in Viola arvensis
Published: 2025-08-21
Subjects: Ecology and Evolutionary Biology, Evolution, Plant Biology, Population Biology
Soil drying induces widespread productivity loss but unequal climate vulnerability among ecotypes of a foundational Arctic sedge
Published: 2025-08-06
Subjects: Biogeochemistry, Plant Biology
1. As temperatures increase in the Arctic, hydrological change may lead to local soil drying through altered snowpack, evapotranspiration, and drainage due to permafrost thaw. These changes threaten to alter soil moisture regimes that control plant productivity and ecosystem carbon cycling. Eriophorum vaginatum, a foundational sedge that accounts for up to 30% of carbon uptake in moist tundra [...]
Topological equivalence of stomata distribution patterns across vascular plants
Published: 2025-07-07
Subjects: Biology, Botany, Integrative Biology, Life Sciences, Plant Biology, Plant Sciences
Stomata are ancient anatomical structures on leaves that regulate the exchange of water vapor, oxygen, and carbon dioxide between plants and the atmosphere. Acting as valve-like gateways between internal tissues and the external environment, stomata may function as locally interacting networks. Theoretical and experimental evidence suggests that local interactions among neighboring stomata [...]
Herbarium specimens reveal regional patterns of tallgrass prairie invasion and changing species abundance across 130 years
Published: 2025-05-28
Subjects: Biodiversity, Botany, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology, Plant Biology, Plant Sciences
The spread of non-native species is an acute threat to global biodiversity. However, a lack of long-term, spatially widespread occurrence data has prevented investigation of how multi-species invasions affect native assemblages. We harnessed more than 65,000 digitized herbarium specimens across 522 species to study how relative abundances of native and non-native species have changed since the [...]
Non-native plant legacies: site-dependent effects on deadwood fungal community species and functions
Published: 2025-03-28
Subjects: Biochemistry, Biophysics, and Structural Biology, Forest Management, Forest Sciences, Life Sciences, Other Ecology and Evolutionary Biology, Plant Biology, Plant Sciences
1) The introduction of non-native species has consequences for ecosystem functions including deadwood decay. Non-native deadwood is a novel substrate for consumers, such as fungi, which drive large portions of carbon cycling, but their response to a novel substrate may depend on their local communities and surrounding environmental conditions. 2) We quantified decomposition rates, chemical [...]
Grazer-induced bioluminescence and toxicity in marine dinoflagellates
Published: 2025-03-10
Subjects: Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Marine Biology, Plant Biology
Marine copepods are the most abundant type of multicellular zooplankton in the global oceans. They imprint their surrounding waters with a unique bouquet of polar lipids; copepodamides. Copepodamides are recognized by prey organisms, who respond by inducing defensive traits including bioluminescence, toxin production, colony size plasticity and structural modifications. Copepodamides are [...]
Prior land use shapes the functional composition of tree-seedling communities along a tropical forest chronosequence
Published: 2025-02-21
Subjects: Biology, Forest Biology, Plant Biology
Tropical rainforests are highly threatened by deforestation, yet they have the potential to regrow naturally when left abandoned. To understand natural recruitment, it is essential to explore the recovery of tree-seedlings and their traits within the community assembly of secondary forests. Here, we studied the taxonomic and functional diversity as well as the composition of tree seedling [...]
Earlier and increased growth of tundra willows after a decade of growth in a warmer common garden environment
Published: 2024-11-08
Subjects: Biology, Botany, Ecology and Evolutionary Biology, Life Sciences, Plant Biology, Plant Sciences, Terrestrial and Aquatic Ecology
1. The expansion of woody shrubs, known as shrubification, is one of the most widely observed patterns of vegetation change in the tundra. Yet, we do not know the relative importance of plant plasticity and genetic change in determining shrub responses to warming. Plastic responses to the environment can be rapid, while genetic differentiation is much slower. 2. We established a common garden [...]
Comparing two ground-based seed count methods and their effect on masting metrics
Published: 2024-10-02
Subjects: Forest Biology, Forest Management, Forest Sciences, Plant Biology
Masting, i.e. interannually variable and synchronized seed production, plays a crucial role in forest ecosystems, influencing wildlife dynamics, pathogen prevalence, and forest regeneration. Accurately capturing masting variability is important for effective forest management, conservation efforts, and predicting ecosystem responses to environmental changes. The adoption of low-cost methods [...]
Tundra vegetation community, not microclimate, controls asynchrony of above and belowground phenology
Published: 2024-06-24
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Plant Sciences, Plant Biology, Plant Sciences, Terrestrial and Aquatic Ecology
The below-ground growing season often extends beyond the above-ground growing season in tundra ecosystems. However, we do not yet know where and when this occurs and whether these phenological asynchronies are driven by variation in local vegetation communities or by spatial variation in microclimate. Here, we combined above- and below-ground plant phenology metrics to compare the relative [...]
Quantifying life-history trade-offs in diameter growth for tropical tree species from a large urban inventory dataset
Published: 2024-06-11
Subjects: Forest Biology, Forest Management, Horticulture, Integrative Biology, Plant Biology, Population Biology
Trees are important ecosystem service providers that improve the physical environment and human experience in cities throughout the world. Since the ecosystem services and maintenance requirements of urban trees change as they grow in time, predictive models of tree growth rates are useful to forecast societal benefits and maintenance costs over a tree’s lifetime. However, many models to date are [...]
Species- and community-level demographic responses of saplings to drought during tropical secondary succession
Published: 2024-06-01
Subjects: Climate, Environmental Indicators and Impact Assessment, Forest Biology, Plant Biology, Terrestrial and Aquatic Ecology
Naturally regenerating secondary vegetation dominates the tropical forest landscapes, showing a remarkable capacity to sequester carbon, but such a role is threatened by increasing drought predicted with climate change. To understand how secondary forest species and communities respond to drought, we leverage a long-term chronosequence of tropical successional forests from Central Panama that [...]