Preprints
Filtering by Subject: Other Ecology and Evolutionary Biology
A universal DNA barcode for the Tree of Life
Published: 2024-01-18
Subjects: Bioinformatics, Computational Biology, Genomics, Other Ecology and Evolutionary Biology
Species identification using DNA barcodes has revolutionized biodiversity sciences and society at large. However, conventional barcoding methods do not reflect genomic complexity, may lack sufficient variation, and rely on limited genomic loci that are not universal across the Tree of Life. Here, we develop a novel barcoding method that uses exceptionally low-coverage genome skim data to create a [...]
A big data and machine learning approach for monitoring the condition of ecosystems
Published: 2024-01-16
Subjects: Applied Statistics, Biodiversity, Bioinformatics, Earth Sciences, Ecology and Evolutionary Biology, Environmental Sciences, Forest Biology, Forest Sciences, Life Sciences, Other Ecology and Evolutionary Biology, Physical Sciences and Mathematics, Statistical Methodology, Statistical Models, Terrestrial and Aquatic Ecology
Ecosystems are highly valuable as a source of goods and services and as a heritage for future generations. Knowing their condition is extremely important for all management and conservation activities and public policies. Until now, the evaluation of ecosystem condition has been unsatisfactory and thus lacks practical implementation for most countries. We propose that ecosystem integrity is a [...]
Biogeographical diet variation within and between the rabbitfishes Siganus corallinus, Siganus virgatus, Siganus doliatus and Siganus trispilos
Published: 2023-12-27
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
Feeding habits of herbivorous fish play an important role in the form and function of coastal marine ecosystems. Rabbitfishes (Siganidae) have been recognized as important consumers of macroalgae in the coral reefs of the Indo-Pacific region. However, it is unclear how their diet varies among and within species at biogeographical scales. The present study assessed the inter- and intra-specific [...]
Shrinking body size may not provide meaningful thermoregulatory benefits in a warmer world
Published: 2023-12-13
Subjects: Comparative and Evolutionary Physiology, Ecology and Evolutionary Biology, Life Sciences, Ornithology, Other Ecology and Evolutionary Biology, Physiology, Terrestrial and Aquatic Ecology, Zoology
In a recent and impressive analysis of avian morphological data (covering >250 000 male birds from 105 species), Youngflesh et al.1 report that birds breeding in North America have become significantly lighter over the last three decades, coincident with rising breeding season temperatures. Because these observations recapitulate predictions under Bergmann’s Rule (i.e., that the body size of [...]
Opinion: Missing half the picture, focus on stony corals during bleaching events has left critical knowledge gaps in our understanding of reef-scale bleaching and recovery
Published: 2023-11-28
Subjects: Biodiversity, Biology, Ecology and Evolutionary Biology, Life Sciences, Marine Biology, Other Ecology and Evolutionary Biology
Octocoral Symbiodiniaceae, but not bacterial communities, are resistant to compositional changes from heat stress on a subtropical reef
Published: 2023-11-20
Subjects: Ecology and Evolutionary Biology, Life Sciences, Marine Biology, Other Ecology and Evolutionary Biology
Microbes are essential to the holobiome of all organisms, so when organisms are impacted by environmental stressors the changes to microbial communities can inform on the health state of the host and even cause host disease. In early 2019 marine heatwaves occurred across eastern Australia, resulting in differential bleaching across Lord Howe Island reefs. Here we examined the Symbiodiniaceae and [...]
Sharing the burden: Cabbage stem flea beetle pest pressure and crop damage are lower in rapeseed fields surrounded by other rapeseed crops
Published: 2023-11-04
Subjects: Agriculture, Entomology, Life Sciences, Other Ecology and Evolutionary Biology
The cabbage stem flea beetle (Psylliodes chrysocephala) is a significant pest of rapeseed (Brassica napus). Feeding by adult P. chrysocephala can cause severe leaf damage and larval infestation can reduce stem strength, both of which impact crop growth and development, causing substantial yield losses and economic damage. The structure of the agricultural landscape can regulate herbivorous pest [...]
Maternal investment and early thermal conditions affect performance and antipredator responses
Published: 2023-10-27
Subjects: Behavior and Ethology, Biology, Evolution, Other Ecology and Evolutionary Biology
Exposure to increased temperatures during early development can lead to phenotypic plasticity in morphology, physiology, and behaviour across a range of ectothermic animals. In addition, maternal effects are known to be important contributors to phenotypic variation in offspring. Whether the two factors interact to shape offspring morphology and behaviour has been barely explored. This is [...]
Functional trait dataset of benthic macroinvertebrates in South Korean streams
Published: 2023-09-22
Subjects: Ecology and Evolutionary Biology, Other Ecology and Evolutionary Biology, Terrestrial and Aquatic Ecology
Functional traits are the result of evolution and adaptation, providing important ecological insights into how organisms interact with their environment. Benthic macroinvertebrates, in particular, have garnered attention as biomonitoring indicators for freshwater ecosystems. This study presents a functional trait dataset for benthic macroinvertebrates, comprising 447 taxa (393 at genus level, 53 [...]
Metaweb and its applications in understanding ecological interactions
Published: 2023-09-22
Subjects: Ecology and Evolutionary Biology, Other Ecology and Evolutionary Biology
Understanding the dynamics of ecological interactions is an essential initial step in acquiring a comprehensive understanding of the ecosystem structure and functions. Such knowledge is pivotal in effective conservation planning, sustainable development, and ecosystem management. However, the limited availability of information on ecological interactions, commonly referred to as Eltonian [...]
KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea
Published: 2023-09-20
Subjects: Other Ecology and Evolutionary Biology, Terrestrial and Aquatic Ecology
Motivation: The metaweb is a dictionary of nodes and their potential interactions developed for a particular region, focusing on a particular type of ecosystem. Based on the local biodiversity information at different spatial and temporal scales, the regional metaweb can be easily decomposed into local webs. The generated local webs are useful for understanding spatiotemporal variations in [...]
Growth and opportunities for drone surveillance in pinniped research
Published: 2023-09-03
Subjects: Ecology and Evolutionary Biology, Integrative Biology, Marine Biology, Other Ecology and Evolutionary Biology, Population Biology, Research Methods in Life Sciences, Zoology
Pinniped species undergo uniquely amphibious life histories that make them valuable subjects for many domains of research. Pinniped research has often progressed hand-in-hand with technological frontiers of wildlife biology, and drones represent a leap forward for methods of aerial remote sensing, heralding data collection and integration at new scales of biological importance. Drone methods and [...]
Warming summer temperatures are rapidly restructuring North American bumble bee communities
Published: 2023-08-29
Subjects: Ecology and Evolutionary Biology, Entomology, Life Sciences, Other Ecology and Evolutionary Biology
A rapidly warming climate is a primary force driving changes in biodiversity worldwide. The impact of warming temperatures on insect communities is of particular interest given their importance for ecosystem function and service provision and the uncertainty around whether insect communities can keep pace with the rate of increasing temperatures. We use a long-term dataset on bumble bee species [...]
The unfulfilled potential of dogs in studying behavioural ecology and evolution during the Anthropocene
Published: 2023-08-07
Subjects: Behavior and Ethology, Evolution, Life Sciences, Other Ecology and Evolutionary Biology, Zoology
Dogs are an exceptional resource for studying ecological, behavioural and evolutionary processes. However, several widespread misconceptions limit our understanding of dog behaviour and inhibit the use of dogs as model study systems in diverse areas of biological science. These include extensive anthropomorphisation of dog behaviour, a profound bias towards almost exclusively studying pet dogs, a [...]
STRyper: an open source macOS application for microsatellite genotyping and chromatogram management
Published: 2023-07-29
Subjects: Biodiversity, Bioinformatics, Molecular Genetics, Other Ecology and Evolutionary Biology
Microsatellite markers analyzed by capillary sequencing remain useful tools for rapid genotyping and low-cost studies. This contrasts with the lack of a free application to analyze chromatograms for microsatellite genotyping that is not restricted to human genotyping. To fill this gap, I have developed STRyper, a macOS application whose source code is published under the General Public License. [...]