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Preprints

Filtering by Subject: Environmental Sciences

An Exact Coarse-Graining Consistent Metapopulation Model

Damiano Pasetto, Jonathan Giezendanner, Andrea Rinaldo

Published: 2025-08-20
Subjects: Environmental Sciences, Other Environmental Sciences, Physical Sciences and Mathematics

Different levels of coarse-graining are of paramount importance to understand how conclusions drawn from local studies can be made general and extrapolated to larger regions. We here investigate how consist metapopulation model are when considering different resolutions of the landscape matrix, i.e. different levels of coarse-graining. A formulation of the metapopulation model, taking into [...]

Progress toward sustainable management of marine crustacean fisheries

Daisuke Goto, Emily Phillips, Genevieve A.C. Phillips, et al.

Published: 2025-08-11
Subjects: Biodiversity, Ecology and Evolutionary Biology, Environmental Sciences, Marine Biology, Natural Resources and Conservation, Natural Resources Management and Policy, Population Biology

Marine crustacean capture fisheries have been contributing increasingly more to global aquatic food production in recent decades, helping secure socioeconomic benefits. In the past decade the landings of marine crustaceans rose by more than 67% while expanding spatially and taxonomically, doubling their contribution to global fisheries landings. Although efforts to improve the data collection [...]

Causal models as a scientific framework for next-generation ecosystem and climate-linked stock assessments

Juliette Champagnat, Cole C. Monnahan, Jane Y Sullivan, et al.

Published: 2025-07-31
Subjects: Biostatistics, Ecology and Evolutionary Biology, Environmental Sciences, Marine Biology, Natural Resources and Conservation, Population Biology, Statistical Methodology, Statistical Models, Terrestrial and Aquatic Ecology

Rapid changes in marine ecosystems highlight the need to account for time-varying productivity in stock assessment models used to support fisheries management. Common approaches incorporate annual variation or regress processes like recruitment, natural mortality, or growth on environmental covariates. While the latter represents a step towards biological realism, it often fails accounting for [...]

Generalized graphical mixed models connect ecological theory with widely used statistical models

James T Thorson

Published: 2025-06-06
Subjects: Applied Statistics, Aquaculture and Fisheries Life Sciences, Biodiversity, Environmental Sciences, Multivariate Analysis

Ecological dynamics are analyzed across multiple sites, times, and variables. Here, we introduce the family of generalized graphical mixed models (GGMMs) and show that it extends structural equation, generalized additive, and generalized linear mixed models. GGMMs represent ecological systems using a mathematical graph, where each analytic unit (node for each site-time-variable) has a direct [...]

Minimum Sampling, Maximum Insight: Tracking Environmental Trends in a Tidal Estuary

Barbara Spiecker, Kalle Matso, Christopher Whitney, et al.

Published: 2025-05-23
Subjects: Environmental Monitoring, Environmental Sciences, Water Resource Management

Long-term environmental monitoring is essential for detecting ecological trends and managing dynamic systems. In estuarine environments, where monitoring is often constrained by cost and logistics, efficient resource allocation is key to sustaining effective programs. We developed a framework to optimize spatial and temporal sampling in the Great Bay Estuary (New Hampshire/Maine, USA), [...]

Accounting for biodiversity impacts of consumption and production: current gaps and frontiers.

Daniel Itzamna Avila-Ortega, Peter Søgaard Jørgensen, Sarah Elisabeth Cornell, et al.

Published: 2025-05-02
Subjects: Biodiversity, Environmental Indicators and Impact Assessment, Environmental Monitoring, Environmental Sciences, Sustainability

The way humans produce and consume material goods continues to be a primary driving force on biodiversity decline. Despite significant advances in quantifying biodiversity footprints, important differences exist across types of approaches and indicators. These include, what aspects of biodiversity are measured and how they are reported. In this scoping review, we provide an overview of [...]

Decline of the globally rare old-growth specklebelly lichen, Pseudocyphellaria rainierensis, and its implications for temperate rainforest conservation

Stephen T. Sharrett, Francis Waldear, John Villella, et al.

Published: 2025-04-25
Subjects: Biodiversity, Botany, Environmental Indicators and Impact Assessment, Environmental Monitoring, Environmental Sciences, Forest Biology, Forest Management, Natural Resources and Conservation, Population Biology

Epiphytic lichens are key components of temperate rainforests, where they contribute to forest hydrology, nutrient cycles, food webs, and overall biomass and biodiversity. Despite their ecological importance and sensitivity to environmental change few protections exist for lichen conservation and management. Pseudocyphellaria rainierensis, or old-growth specklebelly lichen, is considered an [...]

Validating causal inference in time series models with conditional-independence tests

James T Thorson, Cole C. Monnahan, Lauren A. Rogers

Published: 2025-03-17
Subjects: Ecology and Evolutionary Biology, Environmental Sciences, Marine Biology, Natural Resources and Conservation, Population Biology, Sustainability

Ecologists often use time-series models to approximate dynamics arising from density dependence, species interactions, community synchrony, and other processes. Dynamic structural equation models can represent simultaneous and lagged interactions among variables with missing data, and therefore encompasses a wide family of analyses (linear regression, vector autoregressive models, and dynamic [...]

The human fingerprint of medicinal plant species diversity

Nawal Shrestha, Robbie Hart, David Harrison, et al.

Published: 2025-03-14
Subjects: Anthropology, Biodiversity, Bioinformatics, Biotechnology, Environmental Sciences, Medicine and Health Sciences, Other Languages, Societies, and Cultures

Medicinal plants have long been crucial to human civilizations, supporting both traditional and modern healthcare systems. However, the processes influencing the global diversity and distribution of medicinal plants remain underexplored. Their diversity, like that of other species groups, is shaped by abiotic and biotic influences, which include, in unique ways, human ecological (including [...]

Overcoming “doom and gloom”: Envisioning desirable futures for Arctic biodiversity

Jakob Johann Assmann, Gabriela Schaepman-Strub, Anja Helena Liski, et al.

Published: 2025-02-07
Subjects: Biodiversity, Ecology and Evolutionary Biology, Environmental Health and Protection, Environmental Sciences, Natural Resources and Conservation, Natural Resources Management and Policy, Nature and Society Relations, Physical Sciences and Mathematics, Social and Behavioral Sciences, Sustainability

We co-created visions of desirable futures for Arctic biodiversity during a workshop which included representatives from academia, Indigenous Peoples, business and policy-making. Appreciating our diverse perspectives, we identified key actions that would enable the positive outcomes shared in our visions: boosting education, rethinking Arctic biodiversity governance, elevating the voices of [...]

Managing Water for Birds—a Tool for the Malheur National Wildlife Refuge

Cassandra D Smith

Published: 2024-10-22
Subjects: Environmental Sciences, Hydrology, Natural Resources and Conservation, Physical Sciences and Mathematics, Water Resource Management

The “Water for Birds Tool” is a spreadsheet-based model (using Microsoft Excel) designed to help resource managers assess the spatial extent and types of bird habitats in the Malheur National Wildlife Refuge. The model quantifies the areas of open water, partial water, and water depths on a monthly timescale during the irrigation season (April–July) from 2021–2024. This model combines previously [...]

Widespread loss of important ecosystem services from rapidly urbanising Kathmandu Valley

Roshan Sharma, Bhagawat Rimal, Bikash Ghimire

Published: 2024-10-20
Subjects: Environmental Sciences

Ecosystem services are crucial for human well-being as it offers benefits such as food production, water purification, and climate regulation. However, land use change caused by rapid urban expansion poses a significant threat to these services. We investigate the impact of urbanization on ecosystem services in the Kathmandu Valley, a region experiencing intense urban growth. We assessed changes [...]

Climate-linked escalation of societally disastrous wildfires

Calum Cunningham, John Abatzoglou, Crystal Kolden, et al.

Published: 2024-10-18
Subjects: Earth Sciences, Ecology and Evolutionary Biology, Environmental Sciences

Climate change is forcing societies to contend with increasingly fire-prone ecosystems. Yet, despite evidence of more extreme fire seasons, evidence is lacking globally for trends in wildfires with socially and economically disastrous effects. Using a systematic dataset, we analyse the distribution, trends, and climatic conditions connected with the most lethal and costly wildfire disasters from [...]

Ambitions in national plans do not yet match bold international protection and restoration commitments

Justine Bell-James, James Watson

Published: 2024-10-17
Subjects: Environmental Law, Environmental Sciences

Almost 200 nations have made bold commitments to halt biodiversity loss as signatories to the Kunming-Montreal Global Biodiversity Framework (‘GBF’). The effective achievement of the GBF relies on domestic targets and actions, reflected in National Biodiversity Strategies and Action Plans (‘NBSAPs’). NBSAPS are an integral feature of the Convention on Biological Diversity (‘CBD’) framework, and [...]

Is the audience gender-blind? Smaller attendance in female talks highlights imbalanced visibility in academia

Júlia Rodrigues Barreto, Isabella Romitelli, Pamela Cristina Santana, et al.

Published: 2024-05-27
Subjects: Ecology and Evolutionary Biology, Environmental Sciences, Evolution, Gender Equity in Education, Higher Education, Inequality and Stratification, Other Ecology and Evolutionary Biology, Psychological Phenomena and Processes

Although diverse perspectives are fundamental for fostering and advancing science, power relations have limited the development, propagation of ideas, and recognition of political minority groups in academia. Gender bias is one of the most well-documented processes leading women to drop out of their academic careers due to fewer opportunities and lower recognition. Using decadal-scale data on [...]

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