Preprints
Filtering by Subject: Biodiversity
Financial and institutional support are important for large-scale kelp forest restoration
Published: 2020-04-21
Subjects: Biodiversity, Life Sciences, Marine Biology
Kelps form extensive underwater forests that underpin valuable ecosystem goods and services in temperate and polar rocky coastlines worldwide. Stressors such as ocean warming and pollution are causing regional declines of kelp forests and their associated services worldwide. Kelp forest restoration is becoming a prominent management intervention, but we have little understanding of what drives [...]
[Final version available] Explainable Artificial Intelligence enhances the ecological interpretability of black-box species distribution models
Published: 2020-04-17
Subjects: Artificial Intelligence and Robotics, Biodiversity, Computer Sciences, Ecology and Evolutionary Biology, Life Sciences, Physical Sciences and Mathematics, Research Methods in Life Sciences, Terrestrial and Aquatic Ecology
Species distribution models (SDMs) are widely used in ecology, biogeography and conservation biology to estimate relationships between environmental variables and species occurrence data and make predictions of how their distributions vary in space and time. During the past two decades, the field has increasingly made use of machine learning approaches for constructing and validating SDMs. Model [...]
The genomic revolution and species delimitation in birds (and other organisms): gene flow matters, but what about other evolutionary forces?
Published: 2020-04-09
Subjects: Biodiversity, Ecology and Evolutionary Biology, Evolution, Genetics and Genomics, Genomics, Life Sciences
Given the notion that species are population-level lineages and the availability of genomic data to identify separately evolving populations, researchers usually establish species limits based on gene flow or lack thereof. A strict focus on gene flow as the main –or only– criterion to delimit species involves two main complications in practice. First, approaches often used to apply this criterion [...]
The sixth R: Revitalizing the natural phosphorus pump
Published: 2020-03-18
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Terrestrial and Aquatic Ecology
Humans and natural systems face three pressing concerns: the loss of large animal biodiversity, eutrophication of many aquatic systems, and the need to better recycle phosphorus. Here we propose a mechanism to help alleviate these problems. Some have hypothesized that we are approaching “peak phosphorus,” where phosphorus may become more expensive as it becomes rarer, thus endangering the green [...]
Physiological condition of amphibians exposed to historical industrial pollution in a Brazilian biodiversity hotspot
Published: 2020-03-06
Subjects: Animal Sciences, Biodiversity, Biology, Life Sciences, Physiology
Industrial pollution is a significant global threat to biodiversity, but its consequences on rainforest ecosystems remains poorly understood. Amphibians are especially susceptible to pollutants released on natural environments due to their aquatic-terrestrial life cycle. Here, we explored the effects of severe historical air, water and soil industrial pollution of Cubatão Industrial Complex (São [...]
Toward Reliable Biodiversity Dataset References
Published: 2020-01-03
Subjects: Biodiversity, Life Sciences
No systematic approach has yet been adopted to reliably reference and provide access to digital biodiversity datasets. Based on accumulated evidence, we argue that location-based identifiers such as URLs are not sufficient to ensure long-term data access. We introduce a method that uses dedicated data observatories to evaluate long-term URL reliability. From March 2019 through May 2020, we took [...]
Effects of ambient climate and three different warming treatments on fruit production in an alpine meadow community
Published: 2019-12-02
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Plant Sciences, Terrestrial and Aquatic Ecology
Climate change is already having a major impact on alpine and arctic regions, and inter-annual variations in temperature are likely to increase. In a four-year study focusing on fruit production by an alpine plant community in northern Sweden, we applied three different warming regimes over the years. Treatments consisted of (a) a static level of warming with open-top chambers (OTC), (b) press [...]
The hidden value of trees: quantifying the ecosystem services of tree lineages and their major threats across the contiguous US
Published: 2019-11-18
Subjects: Biodiversity, Ecology and Evolutionary Biology, Forest Sciences, Life Sciences, Other Forestry and Forest Sciences
Trees provide critical contributions to human well-being. They sequester and store greenhouse gasses, filter air pollutants, provide wood, food, and other products, among other benefits. These benefits are threatened by climate change, fires, pests and pathogens. To quantify the current value of the flow of ecosystem services from US trees, and the potential threats they face, we combine [...]
Thermal ecology or interspecific competition: what drives the warm and cold distribution limits of mountain ectotherms?
Published: 2019-10-24
Subjects: Animal Sciences, Biodiversity, Ecology and Evolutionary Biology, Life Sciences
Current climate change-forced local extinctions of ectotherms in their warmer distribution limits have been linked to a reduction in their activity budgets by excess of heat. However, warmer distribution limits of species may be determined by biotic interactions as well. We aimed to understand the role of thermal activity budgets as drivers of the warmer distribution limit of cold-adapted [...]
Honey Bee Diversity Is Swayed by Migratory Beekeeping and Trade Despite Conservation Practices: Genetic Evidences for the Impact of Anthropogenic Factors on Population Structure
Published: 2019-10-14
Subjects: Agriculture, Animal Sciences, Apiculture, Biodiversity, Ecology and Evolutionary Biology, Entomology, Genetics, Genetics and Genomics, Life Sciences, Zoology
The intense admixture of honey bee (Apis mellifera L.) populations at a global scale is mostly attributed to the widespread migratory beekeeping practices and replacement of queens and colonies with non-native races or hybrids of different subspecies. These practices are also common in Anatolia and Thrace, but their influence on the genetic make-up of the five native subspecies of honey bees has [...]
Experimenting with the past to improve environmental monitoring programs
Published: 2019-10-14
Subjects: Agriculture, Biodiversity, Ecology and Evolutionary Biology, Environmental Monitoring, Environmental Sciences, Life Sciences, Physical Sciences and Mathematics, Research Methods in Life Sciences
Long-term monitoring programs are a fundamental part of both understanding system dynamics and informing management decisions. However, monitoring programs not always designed to consider statistical power, site selection, or the full costs and benefits of monitoring. Further, data from monitoring programs with different goals and protocols are now being combined for comparative analyses. Key [...]
Avian trait specialization is negatively associated with urban tolerance
Published: 2019-10-10
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences
Generalist species — with their wide niche breadths — are often associated with urban environments, while specialist species are likely to be most at-risk of increasing urbanization processes. But studies which quantify the relationship between trait specialization (i.e., niche breadth) and urban tolerance are generally methodologically limited, with repeatable robust methods to easily quantify [...]
Assessing symbiont extinction risk using cophylogenetic data
Published: 2019-09-25
Subjects: Biodiversity, Ecology and Evolutionary Biology, Genetics and Genomics, Immunology and Infectious Disease, Life Sciences, Other Life Sciences, Parasitology
Symbionts have a unique mode of life that has attracted the attention of ecologists and evolutionary biologists for centuries. As a result of this attention, these disciplines have produced a mature body of literature on host-symbiont interactions. In contrast, the discipline of symbiont conservation is still in a foundational stage. Here, we aim to integrate methodologies on symbiont [...]
Evidence synthesis for tackling research waste
Published: 2019-09-20
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Population Biology, Research Methods in Life Sciences, Terrestrial and Aquatic Ecology
There is an urgent need for a change in research workflows so that pre-existing knowledge is better utilised in designing new research. A formal assessment of the accumulated knowledge prior to research approval would reduce the waste of already limited resources caused by asking low priority questions.
Movement-mediated community assembly and coexistence
Published: 2019-09-20
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences
Organismal movement is ubiquitous and facilitates important ecological mechanisms that drive community and metacommunity composition and hence biodiversity. In most existing ecological theories and models in biodiversity research, movement is represented simplistically, ignoring the behavioural basis of movement and consequently the variation in behaviour at species and individual level. However, [...]