Preprints
Filtering by Subject: Ecology and Evolutionary Biology
Many defense systems in microbial genomes, but which is defending whom from what?
Published: 2021-09-18
Subjects: Ecology and Evolutionary Biology, Evolution, Genetics and Genomics, Life Sciences, Microbiology, Other Microbiology
Prokaryotes have numerous mobile genetic elements (MGE) that mediate horizontal gene transfer between cells. These elements can be costly, even deadly, and cells use numerous defense systems to filter, control or inactivate them. Surprisingly, many phages, conjugative plasmids, and their parasites, phage satellites or mobilizable plasmids, encode defense systems homologous to those of bacteria. [...]
The importance of alternative splicing in adaptive evolution
Published: 2021-09-17
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Although alternative splicing is a ubiquitous gene regulatory mechanism in plants and animals, its contribution to evolutionary transitions is understudied. Splicing enables different mRNA isoforms to be generated from the same gene, expanding transcriptomic and proteomic diversity. While the role of gene expression in adaptive evolution is widely accepted, biologists still debate the functional [...]
Glucocorticoids coordinate changes in gut microbiome composition in wild North American red squirrels
Published: 2021-09-16
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences, Microbiology
Gut microbiome diversity plays an important role in host health and fitness, in part through the diversification of gut metabolic function and pathogen protection. Elevations in glucocorticoids (GCs) appear to reduce gut microbiome diversity in experimental studies, suggesting that a loss of microbial diversity may be a negative consequence of increased GCs. However, given that ecological factors [...]
Functions for simulating data and designing studies of physiological flexibility in the acute glucocorticoid response to stressors.
Published: 2021-09-15
Subjects: Biology, Ecology and Evolutionary Biology, Endocrinology, Integrative Biology, Life Sciences, Physiology
Wild animals often experience unpredictable challenges that demand rapid and flexible responses. The glucocorticoid mediated stress response is one of the major systems that allows vertebrates to rapidly adjust their physiology and behavior. Given its role in responding to challenges, evolutionary physiologists have focused on the consequences of between-individual and, more recently, [...]
Recruitment facilitation in expanding forests of Mediterranean juniper is sex-biased
Published: 2021-09-15
Subjects: Ecology and Evolutionary Biology, Life Sciences, Terrestrial and Aquatic Ecology
Despite noticeable concern about the deforestation rate worldwide, the forest surface in Europe has considerably expanded over the past centuries as a consequence of the rural exodus and abandonment of agrarian practices. Tree recruitment associated with forest regrowth is a multi-stage process influenced by several biotic and abiotic factors. Yet, it is uncertain whether their influence on [...]
Optimizing aerial imagery collection and processing parameters for drone-based individual tree mapping in structurally complex conifer forests
Published: 2021-09-11
Subjects: Ecology and Evolutionary Biology, Forest Sciences, Life Sciences, Research Methods in Life Sciences, Terrestrial and Aquatic Ecology
Recent advances in remotely piloted aerial systems (“drones”) and imagery processing enable individual tree mapping in forests across broad areas with low-cost equipment and minimal ground-based data collection. One such method involves collecting many partially overlapping aerial photos, processing them using “structure from motion” (SfM) photogrammetry to create a digital 3D representation, and [...]
Network-based analysis reveals differences in plant assembly between the native and the invaded ranges.
Published: 2021-09-10
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
Associated with the introduction of exotic species in a new area, interactions with other native species within the recipient community occur, reshaping the original community and resulting in a unique assemblage. Yet, the differences in community assemblage between native and invaded ranges remain unclear. Mediterranean grasslands provide an excellent scenario to study community assembly [...]
Assessing climate risk to support urban forests in a changing climate
Published: 2021-09-09
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
The management of urban forests is a key element of resilience planning in cities across the globe. Urban forests provide ecosystem services as well as other nature-based solutions to 4.2 billion people living in cities. However, to continue to do so effectively, urban forests need to be able to thrive in an increasingly changing climate. Trees in cities are vulnerable to extreme heat and drought [...]
Supergenes on Steroids
Published: 2021-09-09
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Genetics and Genomics, Genomics, Life Sciences
At the birth of supergenes, the genomic landscape is dramatically re-organized leading to pronounced differences in phenotypes and increased intrasexual diversity. Two of the best- studied supergenes in vertebrates are arguably the inversion polymorphisms on chromosomes 2 and 11 in the white-throated sparrow (Zonotrichia albicollis) and the ruff (Calidris pugnax), respectively. In both species, [...]
Contribution of anther color to interaction between plants and flower-visiting arthropods – usefulness of bioresource stocks
Published: 2021-09-07
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Life Sciences
It is very difficult to provide strong evidence of how flower characteristic that may serve to attract pollinators, improve plant fitness. We propose to use the natural variation that we have observed within our wild tomato (Solanum pimpinellifolium) plant stocks to investigate the effect of anther color on attracting flower-visiting arthropods which act as pollinators. By looking at [...]
Make natures role visible to achieve the SDGs
Published: 2021-09-07
Subjects: Agriculture, Biodiversity, Ecology and Evolutionary Biology, Economics, Environmental Studies, Forest Sciences, Life Sciences, Public Affairs, Public Policy and Public Administration, Social and Behavioral Sciences
Central to the premise of the Sustainable Development Goals is the concept that the environment underpins the economic and social dimensions of development, yet the language and structure of the SDG framework are largely blind to these environment-development relationships beyond the "nature" Goals (14 and 15). As a result, ecosystem health continues to decline, development milestones lag, and [...]
A method for low-cost, low-impact insect tracking using retroreflective tags
Published: 2021-09-06
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Life Sciences
Current methods for direct tracking of individual bee movement behaviour have several limitations. In particular, the weight and size of some types of electronic tag may limit their use to larger species. Radars and other electronic systems are also often large and very expensive to deploy. A tool is needed that complements these electronic-tag methods. In particular one that is simple to use, [...]
Hybridization may promote variation in cognitive phenotypes in experimental guppy hybrids
Published: 2021-09-03
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Evolution, Life Sciences
Hybridization is an important mechanism of evolution. While hybrids often express inferior traits and are selected against, hybridization can promote phenotypic variation and produce trait combinations distinct from the parentals, generating novel adaptive potential. Among other traits, hybridization can impact behaviour and cognition and may reinforce species boundaries when hybrids show [...]
Metapopulation-level associations in mutualistic stream fishes
Published: 2021-09-03
Subjects: Ecology and Evolutionary Biology, Life Sciences, Population Biology, Terrestrial and Aquatic Ecology
Positive biotic interactions are recognized as important factors determining species distributions. Although effects of positive interactions have often been observed at local scales, much less is known about consequences at larger spatial scales such as metapopulation dynamics. Here, we study nest associations of stream fishes - widespread reproductive mutualism between host (nest-builder) and [...]
Harmonizing taxon names in biodiversity data: a review of tools, databases, and best practices
Published: 2021-09-03
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
1. The process of standardizing taxon names, taxonomic name harmonization, is necessary to properly merge data indexed by taxon names. The large variety of taxonomic databases and related tools are often not well described. It is often unclear which databases are actively maintained or what is the original source of taxonomic information. In addition, software to access these databases is [...]