Preprints
Filtering by Subject: Life Sciences
All together now: Limitations and recommendations for the simultaneous analysis of all eukaryotic soil sequences
Published: 2020-12-01
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Terrestrial and Aquatic Ecology
The soil environment contains a large, but historically underexplored reservoir of biodiversity. While sequencing of prokaryotic marker genes has become commonplace for the discovery and characterization of soil bacteria and archaea, this approach has been increasingly applied to sequencing eukaryotic marker genes to characterize the diversity of soil eukaryotes. However, understanding the [...]
Qualitative and quantitative methods show stability in patterns of Cepaea nemoralis shell polymorphism in the Pyrenees over five decades
Published: 2020-12-01
Subjects: Biodiversity, Biology, Ecology and Evolutionary Biology, Genetics and Genomics, Life Sciences
One of the emerging strengths of working with the land snail genus Cepaea is that historical collections can be compared against modern day samples, for instance to understand the impact of changing climate and habitat upon shell morph frequencies. However, one potential limitation is that prior studies scored shell ground colour by eye, usually in the field, into three discrete colours yellow, [...]
Evidence for an Allee effect in a declining fur seal population
Published: 2020-11-27
Subjects: Ecology and Evolutionary Biology, Life Sciences, Marine Biology, Population Biology
Allee effects play an important role in the dynamics of many populations and can increase the risk of local extinction. However, some authors have questioned the weight of evidence for Allee effects in wild populations. We therefore exploited a natural experiment provided by two adjacent breeding colonies of contrasting density to investigate the potential for Allee effects in an Antarctic fur [...]
Adaptive ageing theory of faster adaptation and inconsistency of the conventional selection shadow evolutionary theory of ageing.
Published: 2020-11-27
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Selection shadow has been the conventional theory of evolution of ageing for decades. I argue that selection shadow is merely a phenomenon by which deleterious mutation will be inevitably passed on if they manifest only after mating. However, to explain prevalence of ageing, the authors of the conventional theory erroneously equated passing on and persistence by interpreting selection shadow as [...]
Ten considerations for conservation policy makers for the post-COVID-19 transition
Published: 2020-11-27
Subjects: Biology, Integrative Biology, Life Sciences
Public health and safety concerns around the SARS-CoV-2 novel coronavirus (COVID-19) pandemic have greatly changed human behaviour. Such shifts in behaviours including travel patterns, consumerism, and energy use, are variously impacting biodiversity during the human-dominated geological epoch known as the Anthropocene. Indeed, the dramatic reduction in human mobility and activity has been [...]
Mobilising molluscan models and genomes in biology
Published: 2020-11-24
Subjects: Biodiversity, Bioinformatics, Biology, Ecology and Evolutionary Biology, Genetics and Genomics, Laboratory and Basic Science Research Life Sciences, Life Sciences
Molluscs are amongst the most ancient, diverse, and important of all animal taxa. Even so, no individual mollusc species has emerged as a broadly applied model system in biology. We here make the case that both perceptual and methodological barriers have played a role in the relative neglect of molluscs as research organisms. We then summarize the current application and potential of molluscs and [...]
Land use-induced spillover: priority actions for protected and conserved area managers
Published: 2020-11-24
Subjects: Agricultural and Resource Economics, Biodiversity, Communication, Ecology and Evolutionary Biology, Environmental Policy, Environmental Studies, Geography, Health Policy, Immunity, Immunology and Infectious Disease, Immunology of Infectious Disease, International and Area Studies, Life Sciences, Medicine and Health Sciences, Other Ecology and Evolutionary Biology, Other Immunology and Infectious Disease, Other Medicine and Health Sciences, Other Public Affairs, Public Policy and Public Administration, Policy Design, Analysis, and Evaluation, Population Biology, Public Affairs, Public Policy and Public Administration, Public Health, Public Policy, Recreation, Parks and Tourism Administration, Social and Behavioral Sciences, Terrestrial and Aquatic Ecology, Veterinary Medicine
Earth systems are under ever greater pressure from human population expansion and intensifying natural resource use. Consequently, novel micro-organisms that cause disease are emerging, dynamics of pathogens in wildlife are altered by land use change bringing wildlife and people in closer contact. We provide a brief overview of the processes governing ‘land use-induced spillover’, emphasising [...]
Phylogenetic multilevel meta-analysis: A simulation study on the importance of modeling the phylogeny
Published: 2020-11-23
Subjects: Ecology and Evolutionary Biology, Life Sciences, Physical Sciences and Mathematics, Statistical Models, Statistics and Probability
1. Meta-analyses in ecology and evolution require special attention due to certain study characteristics in these fields. First, the primary articles in these fields usually report results that are observed from studies conducted with different species, and the phylogeny among the species violates the independence assumption. Second, articles frequently allow the computation of multiple effect [...]
The photosynthetic pathways of plant species surveyed in Australia’s national terrestrial monitoring network
Published: 2020-11-23
Subjects: Life Sciences, Plant Biology, Plant Sciences
The photosynthetic pathway of plants is a fundamental trait that influences terrestrial environments from the local to global level. The abundance of different photosynthetic pathways in Australia is expected to undergo a substantial shift due to climate change and rising atmospheric CO2; however, tracking change is hindered by a lack of data on the pathways of species, as well as their [...]
Diversity and structure of arbuscular mycorrhizal fungal commmunities and their chemical drivers across dryland habitats in Qatar
Published: 2020-11-22
Subjects: Biodiversity, Bioinformatics, Biotechnology, Desert Ecology, Ecology and Evolutionary Biology, Life Sciences
Qatar is largely characterized by a hyper-arid climate and low soil fertility, which combine to create a stressful soil environment for arbuscular mycorrhizal (AM) fungi. Here we present a study on AM fungi communities and their relationship to soil chemical characteristics. We used high-throughput seqeuncing technique for identifying AM fungal diversity and community composition from different [...]
When bigger isn’t better – implications of large high-severity wildfire patches for avian diversity and community composition
Published: 2020-11-21
Subjects: Ecology and Evolutionary Biology, Life Sciences, Terrestrial and Aquatic Ecology
Aim: Modern wildfires increasingly create large high-severity patches with interior areas far from less disturbed habitats. We evaluated how these trends impact montane bird communities by investigating the effect of internal distance to lower severity areas, high-severity patch size, and years since fire on avian alpha and beta diversity. Location: Sierra Nevada Mountains, California, [...]
Validating morphological condition indices and their relationship with reproductive success in great-tailed grackles
Published: 2020-11-19
Subjects: Animal Sciences, Animal Studies, Ecology and Evolutionary Biology, Life Sciences, Ornithology, Social and Behavioral Sciences
Morphological and physiological variation among individuals has the potential to influence multiple life history characteristics such as dispersal, migration, reproductive success, and survival. Individuals that are in better "condition" can disperse or migrate further or more successfully, have greater reproductive success, and survive longer, particularly in years where environmental conditions [...]
An efficient new assay for measuring zebrafish anxiety: tall tanks that better characterize between-individual differences
Published: 2020-11-18
Subjects: Animal Experimentation and Research, Life Sciences, Research Methods in Life Sciences
Zebrafish (Danio rerio) are increasingly being used to model anxiety. A common behavioral assay employed for assessing anxiety-like behaviors in zebrafish is the “novel tank test”. We hypothesized that using deeper tanks in this test would result in greater between-individual variation in behavioral responses and a more ‘repeatable’ assay. After mapping the literature and identifying common [...]
Pandemics and biodiversity: applying lessons learned to conservation in the post-COVID-19 era
Published: 2020-11-13
Subjects: Biodiversity, Life Sciences
The COVID-19 pandemic has greatly restricted human activities, and wild species are seemingly thriving in human-dominated areas. However, we have little understanding of the consequences for biodiversity from governmental policies and socioeconomic changes in response to COVID-19, and their conservation significance. Understanding these impacts is a priority for setting effective conservation [...]
Combining surveys and on-line searching volumes to analyze public awareness about invasive alien species: a case study with the invasive Asian yellow-legged hornet (Vespa velutina) in Italy
Published: 2020-11-13
Subjects: Ecology and Evolutionary Biology, Entomology, Life Sciences, Other Ecology and Evolutionary Biology, Other Life Sciences
The Asian yellow-legged hornet (Vespa velutina) has been invading Italy since 2013, and it was subjected to management projects aimed at counteracting its spread and raising awareness about its impacts. In autumn 2019, we administered an on-line questionnaire to a convenience sample of 358 beekeepers in Italy. The questionnaire asked them about their sources of information about V. velutina, [...]