Preprints
Filtering by Subject: Life Sciences
Comment on “Information arms race explains plant-herbivore chemical communication in ecological communities”
Published: 2021-09-23
Subjects: Biodiversity, Biology, Ecology and Evolutionary Biology, Entomology, Life Sciences, Plant Biology, Plant Sciences
Zu et al (Science, 19 Jun 2020, p. 1377) propose that an ‘information arms-race’ between plants and herbivores explains plant-herbivore communication at the community level. However, our analysis shows that key assumptions of the proposed model either a) conflict with standard evolutionary theory or b) are not supported by the available evidence. We also show that the presented statistical [...]
Computational Modeling and Evolutionary Implications of Biochemical Reactions in Bacterial Microcompartments
Published: 2021-09-23
Subjects: Biochemistry, Biochemistry, Biophysics, and Structural Biology, Biology, Life Sciences
Bacterial microcompartments (BMCs) are protein-encapsulated compartments found across at least 23 bacterial phyla. BMCs contain a variety of metabolic processes that share the commonality of toxic or volatile intermediates, oxygen-sensitive enzymes and cofactors, or increased substrate concentration for magnified reaction rates. These compartmentalized reactions have been computationally modeled [...]
Agricultural rewilding: a prospect for livestock systems
Published: 2021-09-23
Subjects: Agriculture, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
CONTEXT: Agricultural intensification is a major cause of biodiversity loss. Biodiversity conservation and restoration generally involve human intervention. In comparison, rewilding, a radically different approach to address the erosion of biodiversity, aims to increase the ability of ecological processes to act with little or no human intervention, and thus to enhance biodiversity and the supply [...]
Matrix quality determines the strength of habitat loss filtering on bird communities at the landscape scale
Published: 2021-09-20
Subjects: Animal Sciences, Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Ornithology, Other Ecology and Evolutionary Biology, Terrestrial and Aquatic Ecology
Habitat loss represent a major threat to biodiversity, however, the modulation of their effects by the non-habitat matrix surrounding habitat patches is still undervalued. The landscape matrix might change community assembly in different ways. For example, low-quality matrices can accentuate environmental filtering by reducing resource availability and/or deteriorating abiotic conditions but they [...]
Many defense systems in microbial genomes, but which is defending whom from what?
Published: 2021-09-18
Subjects: Ecology and Evolutionary Biology, Evolution, Genetics and Genomics, Life Sciences, Microbiology, Other Microbiology
Prokaryotes have numerous mobile genetic elements (MGE) that mediate horizontal gene transfer between cells. These elements can be costly, even deadly, and cells use numerous defense systems to filter, control or inactivate them. Surprisingly, many phages, conjugative plasmids, and their parasites, phage satellites or mobilizable plasmids, encode defense systems homologous to those of bacteria. [...]
The importance of alternative splicing in adaptive evolution
Published: 2021-09-17
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Although alternative splicing is a ubiquitous gene regulatory mechanism in plants and animals, its contribution to evolutionary transitions is understudied. Splicing enables different mRNA isoforms to be generated from the same gene, expanding transcriptomic and proteomic diversity. While the role of gene expression in adaptive evolution is widely accepted, biologists still debate the functional [...]
Glucocorticoids coordinate changes in gut microbiome composition in wild North American red squirrels
Published: 2021-09-17
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences, Microbiology
Gut microbiome diversity plays an important role in host health and fitness, in part through the diversification of gut metabolic function and pathogen protection. Elevations in glucocorticoids (GCs) appear to reduce gut microbiome diversity in experimental studies, suggesting that a loss of microbial diversity may be a negative consequence of increased GCs. However, given that ecological factors [...]
Functions for simulating data and designing studies of physiological flexibility in the acute glucocorticoid response to stressors.
Published: 2021-09-16
Subjects: Biology, Ecology and Evolutionary Biology, Endocrinology, Integrative Biology, Life Sciences, Physiology
Wild animals often experience unpredictable challenges that demand rapid and flexible responses. The glucocorticoid mediated stress response is one of the major systems that allows vertebrates to rapidly adjust their physiology and behavior. Given its role in responding to challenges, evolutionary physiologists have focused on the consequences of between-individual and, more recently, [...]
Recruitment facilitation in expanding forests of Mediterranean juniper is sex-biased
Published: 2021-09-16
Subjects: Ecology and Evolutionary Biology, Life Sciences, Terrestrial and Aquatic Ecology
Despite noticeable concern about the deforestation rate worldwide, the forest surface in Europe has considerably expanded over the past centuries as a consequence of the rural exodus and abandonment of agrarian practices. Tree recruitment associated with forest regrowth is a multi-stage process influenced by several biotic and abiotic factors. Yet, it is uncertain whether their influence on [...]
Optimizing aerial imagery collection and processing parameters for drone-based individual tree mapping in structurally complex conifer forests
Published: 2021-09-11
Subjects: Ecology and Evolutionary Biology, Forest Sciences, Life Sciences, Research Methods in Life Sciences, Terrestrial and Aquatic Ecology
Recent advances in remotely piloted aerial systems (“drones”) and imagery processing enable individual tree mapping in forests across broad areas with low-cost equipment and minimal ground-based data collection. One such method involves collecting many partially overlapping aerial photos, processing them using “structure from motion” (SfM) photogrammetry to create a digital 3D representation, and [...]
Allogenous Selection of Mutational Collateral Resistance: Old Drugs Select for New Resistances Within Antibiotic Families
Published: 2021-09-11
Subjects: Life Sciences, Medicine and Health Sciences, Microbiology
Allogeneous selection occurs when an antibiotic selects for resistance to more advanced members of the same family. The mechanisms of allogenous selection are (a) collateral expansion, when the antibiotic expands the gene and gene-containing bacterial populations favoring the emergence of other mutations, inactivating the more advanced antibiotics; (b) collateral selection, when the old [...]
Network-based analysis reveals differences in plant assembly between the native and the invaded ranges.
Published: 2021-09-10
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
Associated with the introduction of exotic species in a new area, interactions with other native species within the recipient community occur, reshaping the original community and resulting in a unique assemblage. Yet, the differences in community assemblage between native and invaded ranges remain unclear. Mediterranean grasslands provide an excellent scenario to study community assembly [...]
Assessing climate risk to support urban forests in a changing climate
Published: 2021-09-10
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology
The management of urban forests is a key element of resilience planning in cities across the globe. Urban forests provide ecosystem services as well as other nature-based solutions to 4.2 billion people living in cities. However, to continue to do so effectively, urban forests need to be able to thrive in an increasingly changing climate. Trees in cities are vulnerable to extreme heat and drought [...]
The potential contribution of private lands to U.S. 30x30 conservation
Published: 2021-09-10
Subjects: Biodiversity, Life Sciences
Coincident with international movements to protect 30% of land and sea over the next decade (‘30x30’), the United States has committed to more than doubling its current protected land area by 2030. While publicly owned and managed protected areas have been the cornerstone of area-based conservation over the past century, such lands are costly to establish and have limited capacity to protect [...]
Supergenes on Steroids
Published: 2021-09-09
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Genetics and Genomics, Genomics, Life Sciences
At the birth of supergenes, the genomic landscape is dramatically re-organized leading to pronounced differences in phenotypes and increased intrasexual diversity. Two of the best- studied supergenes in vertebrates are arguably the inversion polymorphisms on chromosomes 2 and 11 in the white-throated sparrow (Zonotrichia albicollis) and the ruff (Calidris pugnax), respectively. In both species, [...]