Preprints
Filtering by Subject: Life Sciences
Litter quality outweighs climate as a driver of decomposition across the tundra biome
Published: 2023-03-30
Subjects: Life Sciences
Considerable uncertainty exists regarding the strength, direction and relative importance of the drivers of decomposition in the tundra biome, partly due to a lack of coordinated decomposition field studies in this remote environment. Here, we analysed 3717 incubations of two uniform litter types, green and rooibos tea, buried at 330 circum-Arctic and alpine sites to quantify the effects of [...]
Evolution of chemodiversity - From verbal to quantitative models
Published: 2023-03-27
Subjects: Biology, Life Sciences, Plant Sciences
Plants harbour an astonishing amount of chemodiversity, i.e., diversity of specialized metabolites, at different scales. For instance, individual plants can produce a large number of different specialized metabolites and individuals in a population can differ in their metabolite composition. Given the ecological and economic importance of plant chemodiversity, it is important to understand how it [...]
Developing systems theory in soil agroecology: Incorporating heterogeneity and dynamic instability
Published: 2023-03-21
Subjects: Agriculture, Applied Mathematics, Biogeochemistry, Biology, Dynamic Systems, Earth Sciences, Ecology and Evolutionary Biology, Life Sciences, Longitudinal Data Analysis and Time Series, Research Methods in Life Sciences, Soil Science, Sustainability
Ecosystem management is integral to the future of soils, yet anthropogenic drivers represent a key source of uncertainty in ecosystem models. First- and new-generation soil models formulate many soil pools using first-order decomposition, which tends to generate simpler yet numerous parameters. Systems or complexity theory, developed across various scientific and social fields, may help improve [...]
Bacterial Subcellular Architecture, Structural Epistasis, and Antibiotic Resistance
Published: 2023-03-21
Subjects: Life Sciences, Medicine and Health Sciences
Epistasis refers to how genetic interactions between some genetic loci affect phenotypes and fitness. In this study, we propose the concept “structural epistasis” to emphasize the role of the variable physical interactions between molecules located at particular spaces inside the bacterial cell in the emergence of novel phenotypes. The architecture of the bacterial cell (typically a [...]
Breaking down microbial hierarchies
Published: 2023-03-21
Subjects: Ecology and Evolutionary Biology, Life Sciences, Microbiology
Microbial communities that degrade natural polysaccharides are thought to have a hierarchical organization and one-way positive interactions from higher to lower trophic levels. Daniels et al. have recently shown that reciprocal interactions between trophic levels can occur and that these interactions change over the duration of a batch culture.
Allelopathy-selected microbiomes mitigate chemical inhibition of plant performance
Published: 2023-03-19
Subjects: Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Other Plant Sciences, Plant Biology
Allelopathy is a common and important stressor that shapes plant communities and can alter soil microbiomes, yet little is known about the direct effects of allelochemical addition on bacterial and fungal communities or the potential for allelochemical-selected microbiomes to mediate plant performance responses, especially in habitats naturally structured by allelopathy. Here we present the first [...]
Fragmentation disrupts microbial effects on native plant community productivity
Published: 2023-03-18
Subjects: Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences
1. Anthropogenic habitat fragmentation – the breaking up of natural landscapes – is a pervasive threat to biodiversity and ecosystem function worldwide. Fragmentation results in a mosaic of remnant native habitat patches embedded in human-modified habitat known as the “matrix”. By introducing novel environmental conditions in matrix habitats and reducing connectivity of native habitats, [...]
Multi-species dependencies improve forecasts of population dynamics in a long-term monitoring study
Published: 2023-03-13
Subjects: Desert Ecology, Ecology and Evolutionary Biology, Life Sciences, Multivariate Analysis, Population Biology, Statistical Methodology, Statistical Models, Statistics and Probability
Forecasts of community dynamics are essential for the management of biodiversity. Theory suggests these predictions can be improved by leveraging multi-species dependencies to improve models, but empirical support for this is lacking. We test whether models that learn from multiple species, both to estimate nonlinear environmental effects and temporal dependence, improve forecasts for a semi-arid [...]
Prophage mediated control of higher order interactions - insights from systems approaches
Published: 2023-03-11
Subjects: Life Sciences
Prophages, latent viral elements residing in bacterial genomes impact bacterial ecology and evolution in diverse ways. Do these prophage-mediated effects extend beyond the prophage-bacterium relationship? Here, I summarize the latest advances exploring how the impact of prophages are transmitted through multiple levels with potential impacts on ecosystem stability and functioning. The diverse [...]
Temperature-dependant, developmental plasticity and its effects on Allen’s and James’ rule in endotherms
Published: 2023-03-07
Subjects: Comparative and Evolutionary Physiology, Integrative Biology, Life Sciences, Other Ecology and Evolutionary Biology
Ecogeographical rules, describing common trends in animal form across space and time, have provided key insights into the primary factors driving species diversity on our planet. Among the most well-known ecogeographical rules are Bergmann’s Rule and Allen’s rule, with each correlating ambient temperature to the size and shape of endotherms within a species. These two rules have recently [...]
A diversity of fungal pathways contribute to improved soil carbon stability and storage
Published: 2023-03-03
Subjects: Agricultural Science, Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Terrestrial and Aquatic Ecology
While various fungi could facilitate soil C storage and climate change mitigation via carbon (C) cycling, standard soil C tests that measure only bulk soil C cannot disentangle mechanisms underpinning fungal influences and so far research has largely focused on mycorrhizal fungi. Here, we assessed the soil C storage potential of 12 non-mycorrhizal fungi, selected from a wide pool based on traits [...]
Experimental evidence of litter quality and soil moisture rather than temperature as the key driver of litter decomposition along a high-latitude elevational gradient
Published: 2023-03-03
Subjects: Life Sciences
High-latitude soils contain up to 60% of the world’s carbon stocks, but are vulnerable to carbon loss as climate change alters temperature and precipitation, litter quality, and soil biota. Tundra soils are thought to be particularly sensitive to warming due to accelerated permafrost thaw, but quantifying the response of decomposition to changing soil moisture remains a challenge. Understanding [...]
Larval cannibalism in Phyllobates poison frogs
Published: 2023-03-02
Subjects: Biology, Integrative Biology, Life Sciences
Cannibalistic behaviour between tadpoles of dendrobatoid poison frogs has been observed in several species with complex parental care dynamics, leading to the idea that it may have played a role in the evolution of parental care. However, the existence or characteristics of this behaviour remain largely unknown beyond a handful of well-studied species. I report direct and indirect observations of [...]
The effects of preformed vitamin A and provitamin A carotenoid supplementation on tadpoles of the poison frog Phyllobates vittatus
Published: 2023-02-27
Subjects: Biology, Life Sciences, Veterinary Medicine, Zoology
Understanding the nutritional requirements of captive animals is necessary for proper animal husbandry, however, the specific dietary requirements for many amphibian species commonly kept in captivity are unknown. Like most vertebrates, frogs cannot synthesize carotenoids and must therefore obtain these essential nutrients through diet. It is unclear if amphibians can cleave provitamin A [...]
How do microbes grow in nature? The role of population dynamics in microbial ecology and evolution
Published: 2023-02-25
Subjects: Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Evolution, Life Sciences, Microbiology, Systems Biology
The growth of microbial populations in nature is dynamic, as the cellular physiology and environment of these populations change. Population dynamics have wide-ranging consequences for ecology and evolution, determining how species interact and which mutations fix. Understanding these dynamics is also critical for clinical and environmental applications in which we need to promote or inhibit [...]