Genomic evidence of a functional RH2 opsin in New Zealand parrots and implications for pest control

This is a Preprint and has not been peer reviewed. The published version of this Preprint is available: https://doi.org/10.1080/03014223.2022.2053554. This is version 3 of this Preprint.

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Authors

Stefanie Grosser, Ludovic Dutoit, Yasmin Foster, Fiona Robertson, Andrew E. Fidler, Denise Martini, Michael Knapp, Bruce C. Robertson

Abstract

Recent genomic evidence suggest that kea (Nestor notabilis) have a non-functional RH2 opsin gene potentially leading to impaired vision in the green region of the electromagnetic spectrum. In New Zealand, it is standard procedure to add green dye to aerial poison baits used in mammalian predator control operations to deter native birds from eating toxic bait. A visual deficiency could impact how kea perceive and interact with green-dyed baits and thus have unforeseen consequences for kea conservation. Here, we sequenced the partial RH2 gene of seven wild kea and re-analysed the kea genome raw sequencing data of the RH2 locus. We demonstrate that the reported premature stop codon is most likely an assembly artefact. An extended analysis of the published genomes of all three extant New Zealand parrots (Superfamily: Strigopoidea) confirms that the RH2 gene is functional in this entire group.

DOI

https://doi.org/10.32942/osf.io/bcg4r

Subjects

Biology, Ecology and Evolutionary Biology, Genetics and Genomics, Life Sciences

Keywords

bird vision, kea, New Zealand parrots, opsins, pest control, RH2

Dates

Published: 2022-01-25 20:37

Last Updated: 2022-03-25 20:47

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License

CC-By Attribution-ShareAlike 4.0 International

Additional Metadata

Data and Code Availability Statement:
See "Data availability statement" section. GenBank Accessions will be updated once they become available.