This is a Preprint and has not been peer reviewed. This is version 2 of this Preprint.
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Supplementary Files
- Supplementary File 1. Blank template in .xlsx format
- Supplementary File 2. Blank template in .csv format
Authors
Abstract
Thousands of scientists and practitioners conduct research on infectious diseases of wildlife. Rapid and comprehensive data sharing is vital to the transparency and actionability of their work, but unfortunately, most efforts designed to publically share these data are focused on pathogen determination and genetic sequence data. Other facets of existing surveillance data – particularly negative results – are often withheld or, at best, summarized in a descriptive table with limited metadata. As a result, very few datasets on wildlife disease dynamics over space and time are publicly available for synthesis research or applied uses in conservation or public health. Here, we propose a minimum data and metadata reporting standard for wildlife disease studies. Our checklist identifies a minimum set of 30 fields required to standardize and document a dataset consisting of records disaggregated to the finest possible spatial, temporal, and taxonomic scale. We illustrate how this standard is applied to an example study, which documented a novel alphacoronavirus found in bats in Belize. Finally, we outline best practices for how data should be formatted for optimal re-use, and how researchers can navigate potential safety concerns around data sharing.
DOI
https://doi.org/10.32942/X2TW4J
Subjects
Animal Diseases, Biodiversity, Bioinformatics, Diseases, Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Microbiology, Parasitic Diseases, Veterinary Infectious Diseases, Veterinary Medicine, Virology, Virus Diseases
Keywords
wildlife, One Health, surveillance, data science, open science
Dates
Published: 2024-05-19 21:43
Last Updated: 2024-06-18 05:52
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License
CC BY Attribution 4.0 International
Additional Metadata
Language:
English
Conflict of interest statement:
None
Data and Code Availability Statement:
The example dataset and blank templates are available from Github. No code is used in this manuscript.
There are no comments or no comments have been made public for this article.