Report of programming bugs in the DAISIE R package: consequences and correction

This is a Preprint and has not been peer reviewed. This is version 2 of this Preprint.

Add a Comment

You must log in to post a comment.


Comments

There are no comments or no comments have been made public for this article.

Downloads

Download Preprint

Supplementary Files
Authors

Luis Valente, Nadiah Kristensen, Albert Phillimore , Rampal S. Etienne

Abstract

DAISIE (Dynamic Assembly of Islands through Speciation, Immigration and Extinction) is a framework for a dynamic stochastic model of island biogeography that can be used to estimate the rates of colonisation, speciation and extinction (CES rates) from phylogenetic trees of insular communities by maximum likelihood, and to simulate such data sets given a set of rates. The framework is available in an R package, and has been used in various studies to estimate CES rates for different insular systems based on molecular phylogenetic data. Simulations with estimated parameters have been used to explore the goodness-of-fit of the model and uncertai...  more

DOI

https://doi.org/10.32942/osf.io/w5ntf

Subjects

Biodiversity, Biology, Ecology and Evolutionary Biology, Life Sciences

Keywords

Bug, DAISIE, Island biogeography, modelling, phylogeny

Dates

Published: 2021-03-24 13:06

Last Updated: 2021-03-24 16:27

Older Versions
License

CC-By Attribution-NonCommercial-NoDerivatives 4.0 International