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MSCquartets 3.3: Fast Inference of Species Networks and Trees of Blobs under the Multispecies Coalescent
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Abstract
The R package MSCquartets offers a suite of methods for testing and inferring species relationships from gene trees under coalescent models.
MSCquartets 3.3 significantly extends the functionality of version 1.0 by implementing the TINNiK and ECToBlob algorithms for inference of the tree of blobs under the network multispecies coalescent model (NMSC). Additionally, it implements the NANUQ+ algorithm, a fast method for inference of level-1 networks. Computational speed of all functionalities is greatly improved through use of C++ routines, and a Shiny App is introduced for easier exploration of basic analyses.
DOI
https://doi.org/10.32942/X24D5W
Subjects
Bioinformatics
Keywords
phylogenetic network, admixture graph, network multispecies coalescent, hybridization, gene flow, admixture, admixture, network multispecies coalescent, hybridization, admixture graph, gene flow
Dates
Published: 2026-06-09 09:03
Last Updated: 2026-06-09 09:03
License
CC BY Attribution 4.0 International
Additional Metadata
Data and Code Availability Statement:
https://cran.r-project.org/package=MSCquartets
Language:
English
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