Preprints
Filtering by Subject: Ornithology
Social interactions shape anaerobic, but not aerotolerant, gut microbiome composition in a cooperative breeding species
Published: 2025-06-20
Subjects: Environmental Microbiology and Microbial Ecology Life Sciences, Ornithology
Background Social transmission of microbes has profound impacts on disease epidemiology and host health. However, how social factors influence gut microbiome (GM) transmission in wild populations is not well understood. Here, we use a wild population of the Seychelles warbler, a facultative cooperatively breeding passerine, to determine whether cooperative breeding behaviour influences the GM. [...]
Colorful birds face heightened extinction risk around the world
Published: 2025-06-10
Subjects: Biodiversity, Ecology and Evolutionary Biology, Environmental Studies, Life Sciences, Ornithology
Many of the functional traits that mediate extinction risk across the tree life relate indirectly to a species’ ability to persist in a changing world. Yet, there are certain traits such as coloration that directly affect human interactions with wildlife. Here, we use an existing dataset of color metrics for 4334 passerine bird species combined with global functional trait data to determine [...]
Deep-learning technology provides insights into the morphological evolution of birds
Published: 2025-04-09
Subjects: Biodiversity, Bioinformatics, Computational Engineering, Evolution, Life Sciences, Ornithology, Research Methods in Life Sciences
The evolution of biological morphology is critical for understanding the diversity of the natural world, yet traditional analyses often involve subjective biases in the selection and coding of morphological traits. This study employs deep learning techniques, utilizing a pretrained ResNet34 model capable of recognizing over 10,000 bird species, to explore avian morphological evolution. We [...]
Inferring reproductive phenology and success from proportions of juveniles in population monitoring
Published: 2025-03-13
Subjects: Longitudinal Data Analysis and Time Series, Ornithology, Statistical Methodology
1. Phenological shifts caused by climate change are increasingly documented in wild populations by the widespread collection of datasets on reproductive timing and success. These phenological events are often inferred by examining changes in population abundance and age structure throughout the breeding season. However, the quantitative relationship between the observed proportion of juveniles [...]
High-resolution habitat suitability maps for all widespread Italian breeding bird species
Published: 2025-02-18
Subjects: Life Sciences, Ornithology, Other Ecology and Evolutionary Biology
Tackling the current global biodiversity crisis requires spatially accurate biodiversity data to rapidly assess knowledge gaps and set conservation priorities. Obtaining accurate data across large spatial scales is often challenging, due to the massive logistical and economic requirements of large-scale surveys. Here, we provide high-resolution (0.81 to 81 km², depending on species ecology) [...]
OSEA, a deep learning-based bird classification tool, with pre-trained model, mobile and command line applications
Published: 2025-01-07
Subjects: Biodiversity, Bioinformatics, Life Sciences, Ornithology
In response to the challenges of traditional biodiversity monitoring methods, we introduce OSEA (Open Species Estimation for Avians), a multi-platform, offline tool for bird species identification. Designed to recognize over 10,000 bird species, OSEA includes both a mobile application and a command-line interface (CLI), facilitating efficient bird species identification. The mobile app, developed [...]
Dynamic parental roles revealed by fine-scale hunting behaviour with concurrent pair tracking in the wild
Published: 2024-12-23
Subjects: Behavior and Ethology, Life Sciences, Ornithology, Zoology
Parental cooperation in offspring care is essential for offspring survival in species with extended biparental care. Yet, the mechanisms through which each parent’s foraging skills and performance shape both their own and their partner’s contributions to offspring rearing, particularly in natural conditions, remain poorly understood. Using high-resolution GPS and accelerometer data, we [...]
Gut microbiome composition and function – including transposase gene abundance - varies with age, but not senescence, in a wild vertebrate
Published: 2024-11-14
Subjects: Bioinformatics, Ecology and Evolutionary Biology, Life Sciences, Microbiology, Ornithology
Studies on wild animals, mostly undertaken using 16S metabarcoding, have yielded ambigous evidence regarding changes in the gut microbiome (GM) with age and senescence. Furthermore, variation in GM function has rarely been studied in such wild populations, despite GM metabolic characteristics potentially being associated with host senescent declines. Here, we used seven years of longitudinal [...]
Temporal stability in songs across the breeding range of the Mourning Warbler may be due to learning fidelity and transmission biases
Published: 2024-09-30
Subjects: Animal Sciences, Behavior and Ethology, Ecology and Evolutionary Biology, Life Sciences, Ornithology
We found a stable pattern of geographic variation in songs across the breeding range of the Mourning Warbler over a 36 yr period. The Western, Eastern, Nova Scotia, and Newfoundland regiolects found in 2005-2009 also existed from 1983-1988 and 2017-2019. Each regiolect contained a pool of syllables that were unique and different from the other regiolects. The primary syllable types that defined [...]
Creating a Dataset for the Detection of Flying Birds
Published: 2024-09-20
Subjects: Artificial Intelligence and Robotics, Ornithology
We present a pipeline for collecting a dataset for the detection of flying birds in videos. We treat the creation of a dataset as an iterative task, which allows to train an inference system periodically, and to improve gradually its performance. We follow a three stage pipeline, that includes repetitive video recording, video annotation and frame sampling for training a Deep Learning detector. [...]
A top predator provokes similar defense behavior as a mesopredator in an intraguild prey
Published: 2024-08-26
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Ornithology
The loss of top predators has been shown to lead to drastic changes in community structure. An important part of this is the shift in behavior of other species. The understanding of such changes is scarce because recordings of behavioral reactions towards lost species are rarely done. This is important for predators experiencing predation pressure themselves, known as intraguild predation. [...]
No support for honest signalling of male quality in zebra finch song
Published: 2024-08-12
Subjects: Behavior and Ethology, Evolution, Life Sciences, Ornithology
Alam et al.1 claim to have discovered a song feature, “path length”, that honestly signals male fitness and is therefore preferred by all females. However, their data and analyses provide no statistical support for this claim. (1) The key finding — that long-path songs are difficult to learn (Fig. 4c) — is a statistical artefact: regressing y minus x on x creates an illusory effect where none [...]
Mapping migratory routes: Avian conservation-focused opportunities for a pan-European automated telemetry network
Published: 2024-07-17
Subjects: Behavior and Ethology, Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Ornithology, Other Animal Sciences, Other Ecology and Evolutionary Biology, Population Biology
Accelerated biodiversity loss during the Anthropocene has destabilised functional links within and between ecosystems. Migratory species that cross different ecosystems on their repeated journeys between breeding and non-breeding sites are particularly sensitive to global change because they are exposed to various, often ecosystem-specific threats. As these bring both lethal and non-lethal [...]
Asian Hornbill Bibliography: a dynamic, online, open-access reference database for use in manuscript citations and hornbill research
Published: 2024-06-18
Subjects: Animal Sciences, Biodiversity, Ecology and Evolutionary Biology, Environmental Studies, Forest Sciences, Library and Information Science, Nature and Society Relations, Ornithology, Plant Sciences, Publishing, Scholarly Publishing
Bibliographic databases and citation tools are integral aids to research. The Asian Hornbill Bibliography presents a compendium of research on Asian hornbills by combining an open access bibliographic database with the free and open source reference manager, Zotero. The bibliography, also hosted and made accessible from the IUCN Hornbill Specialist Group website, includes 725 publications, [...]
Light Pollution at Sea: Implications and Potential Hazards of Human Activity for Offshore Bird and Bat Movements in the Greater North Sea
Published: 2024-05-24
Subjects: Environmental Health and Protection, Environmental Indicators and Impact Assessment, Environmental Studies, Life Sciences, Marine Biology, Natural Resources and Conservation, Natural Resources Management and Policy, Nature and Society Relations, Ornithology, Other Animal Sciences, Other Ecology and Evolutionary Biology, Social and Behavioral Sciences, Terrestrial and Aquatic Ecology, Water Resource Management, Zoology
Human activity in the North Sea is intensifying, as emerging uses, such as offshore wind farms (OWFs) and liquid natural gas (LNG) terminals, are added to fishing, freight shipping and fossil fuel production as traditional forms of resource exploitation. The volume and scale of these additional installations are projected to increase substantially in the coming decades, which amplifies the need [...]