Preprints
Filtering by Subject: Microbiology
How environmental conditions affect the acquisition, establishment, and persistence of microbial endosymbiosis in insects
Published: 2026-03-26
Subjects: Ecology and Evolutionary Biology, Life Sciences, Microbiology, Other Ecology and Evolutionary Biology, Other Microbiology
Long-term interactions between insect hosts and their internal microbial symbionts are ubiquitous. As these interactions support many aspects of the insect host biology, restrictions to their establishment and maintenance could have important consequences to the survival of insects and functioning of ecosystems. The current literature provides extensive evidence that rapidly changing [...]
From Trading Genes to Crafting New Tricks: How Horizontal Gene Transfer Potentiates the Emergence of Novel Functions
Published: 2026-03-17
Subjects: Evolution, Genetics, Genomics, Microbiology
Horizontal gene transfer (HGT), the set of processes by which genetic information is transferred between individuals, has shaped life’s evolution. It is particularly frequent in microbial organisms, where it has driven numerous remarkable adaptations to extreme conditions, anti-microbial agents, or biotic interactions. Its role in spreading novel functions is now documented by countless examples [...]
The lens of the Sonic Holobiont. A perspective on acoustic influence on microbial communities and its application as an additional layer to the holobiont concept.
Published: 2026-03-11
Subjects: Arts and Humanities, Biochemistry, Biophysics, and Structural Biology, Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Microbiology, Other Arts and Humanities, Other Physical Sciences and Mathematics, Physical Sciences and Mathematics
When studying micro and macro biomes in the quest for a more general understanding, we can hardly escape from a holistic perspective. At first, symbiosis was demonstrated to be a ubiquitous phenomenon in living cells, shaping evolutionary patterns across species at very different scales. The “holobiont” concept gains a central role in modern biology. The observation of the complex inter- and [...]
Thermal filtering reveals a cryptic reservoir of thermotolerant yeasts in Sub-Antarctic soils
Published: 2026-03-05
Subjects: Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Microbiology
Global climate change is accelerating ecological transformation in Sub-Antarctic ecosystems, where resident biota exhibit narrow thermal tolerances. While microbial responses to warming are increasingly documented, the role of soil yeasts, key players in organic matter decomposition, remains poorly understood. Here, we show that warming acts as a deterministic filter, triggering a profound [...]
Composite virulence: useful metric or conceptual trap?
Published: 2026-02-20
Subjects: Animal Diseases, Animal Experimentation and Research, Animal Sciences, Biodiversity, Biology, Ecology and Evolutionary Biology, Evolution, Immunity, Immunology and Infectious Disease, Immunology of Infectious Disease, Immunopathology, Life Sciences, Medical Microbiology, Microbiology, Other Ecology and Evolutionary Biology, Other Immunology and Infectious Disease, Parasitic Diseases, Parasitology, Pathogenic Microbiology, Plant Pathology, Research Methods in Life Sciences, Zoology
Virulence, the harm an infection causes to its host, is a cornerstone concept in ecology and evolution, yet it remains difficult to quantify because infection impact is multidimensional, dynamic, and context-dependent. Infections can reduce host performance through multiple, partially redundant routes (including mortality, fecundity loss, behavioural impairment, and physiological disruption), [...]
Anergiobiosis: a testable framework for microbial life under extreme power limitation
Published: 2026-02-20
Subjects: Biology, Life Sciences, Marine Biology, Microbiology
"Aeonophily" was recently suggested as a new category of extremophily for ultra-slow-growing subsurface microorganisms. This terminology conflates a physiological state with potential extremophilic specialization. We propose "anergiobiosis" to describe life without sufficient power to sustain cell division, separating this state from questions about specialization. Analogous to temperature [...]
Interplay of diet, heat stress, and the microbiome shapes health and escape behavior in amphibian larvae
Published: 2026-02-11
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Microbiology, Organismal Biological Physiology
What animals eat modulates their microbiome and is fundamental to their health. Microbiomes can improve hosts’ ability to cope with environmental stressors, including increased temperatures and altered food quantity and quality associated with climate change. Using a multifactorial experimental design, we tested whether three diets with increasing amounts of protein, fat, and components of animal [...]
Biochar–Microbial Synergistic Systems for Nitrogen and Phosphorus Removal in Polluted Waters: Mechanisms, Studies, and Insights
Published: 2025-12-11
Subjects: Environmental Engineering, Microbiology, Terrestrial and Aquatic Ecology
Eutrophication caused by increasing non-point source pollution has resulted in the accumulation of nitrogen and phosphorus in water bodies, leading to severe algal blooms, oxygen depletion, and ecosystem degradation. However, conventional remediation technologies often face limitations in efficiency and sustainability. Biochar, derived from organic waste, has gained attention for its strong [...]
Beneath the Pavement: Understanding mycorrhizal fungi in urban ecosystems and the path forward
Published: 2025-11-03
Subjects: Biodiversity, Biology, Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Environmental Studies, Human Ecology, Life Sciences, Microbiology, Social and Behavioral Sciences, Urban Studies and Planning
Urban expansion is reshaping ecosystems worldwide, yet the responses of mycorrhizal fungi—key mediators of plant–soil interactions—remain poorly understood. In this review, we synthesize current knowledge on the environmental and ecological factors shaping mycorrhizal fungal diversity, distribution, and function in cities. We highlight how greenspace and landscape features—including plant [...]
Microplastic interference influences Pseudomonas fluorescens in denitrification efficiency of wastewater treatment
Published: 2025-10-28
Subjects: Ecology and Evolutionary Biology, Microbiology, Pharmacology, Toxicology and Environmental Health
Wastewater treatment plants (WWTP) play an essential role in pathogen and contaminant removal in wastewater. While developed countries treat approximately 70% of industrial wastewater prior to discharge, only about 8% is treated in developing countries. WWTP solutions can reduce the solids load, including microplastics, by up to 98.4%. Still, it is estimated that about 65 million microplastics [...]
Bridging the scales: what can microbial ecologists learn from classic ecology?
Published: 2025-06-30
Subjects: Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Microbiology
The fields of ecology and microbiology have historically developed independently of one another, resulting in each having unique methods, terminology, and concepts. Microbial ecology aims to synthesise these perspectives, merging the molecular and reductionist strengths of the microbiologist with the systems-level viewpoint of the ecologist. However, unifying disciplines with independent [...]
Two Metschnikowia nectar yeast species have similar volatile profiles, but elicit differential foraging in bee pollinators
Published: 2025-06-18
Subjects: Ecology and Evolutionary Biology, Entomology, Life Sciences, Microbiology, Organismal Biological Physiology, Other Microbiology
Nectar yeasts are a highly specialized group of fungi that may play key roles in pollination ecology. Nectar yeasts lack an independent dispersal mechanism to access new habitats with fresh resources. Yeasts, bumble bee pollinators, and flowering plants likely take part in a series of diffuse mutualisms, wherein yeast attract bees that provide phoretic travel between flowers. This interaction [...]
Elevating the importance of Risk of Bias assessment for ecology and evolution
Published: 2025-06-16
Subjects: Agriculture, Animal Sciences, Biodiversity, Biology, Ecology and Evolutionary Biology, Entomology, Life Sciences, Marine Biology, Microbiology, Plant Sciences, Research Methods in Life Sciences
Systematic reviews and meta-analyses are key evidence synthesis methods informing research and policy. An assessment of the Risk of Bias (RoB) in included studies is normally considered an essential component of these. However, RoB assessment is rare in ecology and evolutionary biology (EEB), and tools from other fields are seldom adopted. To identify reasons for this limited uptake, we surveyed [...]
Applying Evolutionary Theory to Understand Host-Microbiome Evolution: New Tricks for Old Dogs
Published: 2024-11-27
Subjects: Ecology and Evolutionary Biology, Microbiology
All plants and animals are host to a community of microorganisms, their microbiomes, that have crucial influences on the life history and performance of their hosts. Despite the importance of such host-microbiome relationships, relatively little is known about the role microbiomes play in mediating evolution of the host as well as entire host-microbe assemblages. This knowledge gap is partly due [...]
Gut microbiome composition and function – including transposase gene abundance - varies with age, but not senescence, in a wild vertebrate
Published: 2024-11-14
Subjects: Bioinformatics, Ecology and Evolutionary Biology, Life Sciences, Microbiology, Ornithology
Studies on wild animals, mostly undertaken using 16S metabarcoding, have yielded ambigous evidence regarding changes in the gut microbiome (GM) with age and senescence. Furthermore, variation in GM function has rarely been studied in such wild populations, despite GM metabolic characteristics potentially being associated with host senescent declines. Here, we used seven years of longitudinal [...]