Preprints
Filtering by Subject: Plant Sciences
Topological equivalence of stomata distribution patterns across vascular plants
Published: 2025-07-07
Subjects: Biology, Botany, Integrative Biology, Life Sciences, Plant Biology, Plant Sciences
Stomata are ancient anatomical structures on leaves that regulate the exchange of water vapor, oxygen, and carbon dioxide between plants and the atmosphere. Acting as valve-like gateways between internal tissues and the external environment, stomata may function as locally interacting networks. Theoretical and experimental evidence suggests that local interactions among neighboring stomata [...]
Elevating the importance of Risk of Bias assessment for ecology and evolution
Published: 2025-06-16
Subjects: Agriculture, Animal Sciences, Biodiversity, Biology, Ecology and Evolutionary Biology, Entomology, Life Sciences, Marine Biology, Microbiology, Plant Sciences, Research Methods in Life Sciences
Systematic reviews and meta-analyses are key evidence synthesis methods informing research and policy. An assessment of the Risk of Bias (RoB) in included studies is normally considered an essential component of these. However, RoB assessment is rare in ecology and evolutionary biology (EEB), and tools from other fields are seldom adopted. To identify reasons for this limited uptake, we surveyed [...]
Comparing statistical methods for detecting climatic drivers of mast seeding
Published: 2025-06-16
Subjects: Biology, Ecology and Evolutionary Biology, Forest Sciences, Life Sciences, Plant Sciences
Understanding the drivers of mast seeding is critical for predicting reproductive dynamics in perennial plants. Here, we evaluate the performance of four statistical methods for identifying weather-associated drivers of annual seed production, i.e, weather cues: climate sensitivity profile, P-spline regression, sliding window analysis, and peak signal detection. Using long-term seed production [...]
Mapping the next forest generation reveals multiple regeneration gaps across German forests
Published: 2025-05-31
Subjects: Forest Biology, Forest Management, Forest Sciences, Other Forestry and Forest Sciences, Plant Sciences
In face of global change and increasing forest disturbances, forest regeneration is crucial for ensuring future generations of trees and resilient forest ecosystems. However, spatially explicit information on the current availability and climate suitability of seedlings and saplings remains scarce. We assessed the potential to predict species-specific forest regeneration densities at high [...]
Herbarium specimens reveal regional patterns of tallgrass prairie invasion and changing species abundance across 130 years
Published: 2025-05-28
Subjects: Biodiversity, Botany, Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology, Plant Biology, Plant Sciences
The spread of non-native species is an acute threat to global biodiversity. However, a lack of long-term, spatially widespread occurrence data has prevented investigation of how multi-species invasions affect native assemblages. We harnessed more than 65,000 digitized herbarium specimens across 522 species to study how relative abundances of native and non-native species have changed since the [...]
Plant genomic variation and its implications for proposed EU NGT legislation
Published: 2025-04-09
Subjects: Biotechnology, Ecology and Evolutionary Biology, Evolution, Genetics, Genetics and Genomics, Genomics, Life Sciences, Molecular Genetics, Plant Breeding and Genetics Life Sciences, Plant Sciences
The European Commission proposal for New Genomic Techniques (NGTs) of July 2023 specifies that NGT1 plants, which are considered equivalent to conventional plants, may differ from the recipient or parental plant by no more than 20 insertions, which cannot be longer than 20 bp; deletions can be of any size and number. Here, we examine the proposed 20/20 NGT1 limit against the background of the [...]
Non-native plant legacies: site-dependent effects on deadwood fungal community species and functions
Published: 2025-03-28
Subjects: Biochemistry, Biophysics, and Structural Biology, Forest Management, Forest Sciences, Life Sciences, Other Ecology and Evolutionary Biology, Plant Biology, Plant Sciences
1) The introduction of non-native species has consequences for ecosystem functions including deadwood decay. Non-native deadwood is a novel substrate for consumers, such as fungi, which drive large portions of carbon cycling, but their response to a novel substrate may depend on their local communities and surrounding environmental conditions. 2) We quantified decomposition rates, chemical [...]
Responses to climate change – insights and limitations from herbaceous plant model systems
Published: 2025-03-24
Subjects: Ecology and Evolutionary Biology, Plant Sciences
Herbaceous plant species have been the focus of extensive, long-term research into climate change responses, but there has been little effort to synthesize results and predicted outlooks from different model species. We summarize research on climate change responses for eight intensively-studied herbaceous plant species. We establish generalities across species, examine limitations, interrogate [...]
Recovery of forest structural complexity during secondary succession in the tropics
Published: 2025-03-19
Subjects: Agricultural Science, Forest Sciences, Life Sciences, Plant Sciences, Terrestrial and Aquatic Ecology
Forest structural complexity is an essential determinant of forest ecosystem functions and biodiversity. The natural dynamics of structural complexity of tropical forests remain largely unexplored, especially for naturally regenerating forest during secondary succession. Better understanding the trajectories of forest structural complexity recovery is crucial to inform the development of forest [...]
MYB regulator of ‘colorless’ flavonols underlies the evolution of red flowers in Iochroma (Solanaceae)
Published: 2025-03-13
Subjects: Ecology and Evolutionary Biology, Genetics and Genomics, Life Sciences, Plant Sciences
Anthocyanins, the pigments that give rise to blue, purple, red and pink colors in many flowers and fruits, are produced by the deeply conserved flavonoid biosynthesis pathway. The regulation of this pathway is thus fundamental for species differences in color across flowering plants, and a growing body of evidence implicates MYB transcription factors as key players activating or suppressing the [...]
Bridging data silos to holistically model plant macrophenology
Published: 2025-01-29
Subjects: Ecology and Evolutionary Biology, Life Sciences, Plant Sciences
Phenological response to global climate change can impact ecosystem functions. There are various data sources from which spatiotemporal and taxonomic phenological data may be obtained: mobilized herbaria, community science initiatives, observatory networks, and remote sensing. However, analyses conducted to date have generally relied on single sources of these data. Siloed treatment of data in [...]
Phytoremediation of Heavy Metals: Techniques, Challenges, and Prospects
Published: 2025-01-02
Subjects: Biodiversity, Biology, Ecology and Evolutionary Biology, Life Sciences, Plant Sciences
Heavy metals, characterized by their high atomic mass and density, can pose significant risks to soil, water, plants, and human health. Contamination sources include manufacturing activities, mining, farming practices, and improper waste management. Metals such as arsenic, mercury, lead, chromium, and cadmium are most toxic with health consequences that can result from organ dysfunction to [...]
Transparency and reproducibility in invasion science
Published: 2024-12-06
Subjects: Botany, Ecology and Evolutionary Biology, Life Sciences, Plant Sciences
Policymakers and practitioners overseeing invasive species management depend on reliable research for guidance. Transparency and reproducibility are core features of reliable research, and prerequisites for outcomes to be independently replicated within the same or different systems. These features are evidently lacking in many science disciplines, including Ecology. In this Discussion [...]
Earlier and increased growth of tundra willows after a decade of growth in a warmer common garden environment
Published: 2024-11-08
Subjects: Biology, Botany, Ecology and Evolutionary Biology, Life Sciences, Plant Biology, Plant Sciences, Terrestrial and Aquatic Ecology
1. The expansion of woody shrubs, known as shrubification, is one of the most widely observed patterns of vegetation change in the tundra. Yet, we do not know the relative importance of plant plasticity and genetic change in determining shrub responses to warming. Plastic responses to the environment can be rapid, while genetic differentiation is much slower. 2. We established a common garden [...]
Niche dynamics of alien plant species in Mediterranean Europe
Published: 2024-11-03
Subjects: Biology, Ecology and Evolutionary Biology, Life Sciences, Plant Sciences
Aim Humans have spread plants globally for millennia, inadvertently causing ecological disruptions. However, biological invasions also provide a unique opportunity to study the process of niche dynamics, through which species adapt their niche when confronted with novel environments. Focusing on the Mediterranean Basin, we assessed 1) which traits favour niche dynamics, and 2) whether niche [...]