Preprints
Filtering by Subject: Evolution
Repeated mitochondrial capture with limited genomic introgression in a lizard group
Published: 2025-02-19
Subjects: Ecology and Evolutionary Biology, Evolution, Genetics and Genomics, Life Sciences
Mitochondrial introgression is common among animals and is often first identified through mitonuclear discordance — discrepancies between evolutionary relationships inferred from mitochondrial DNA (mtDNA) and nuclear DNA (nuDNA). Over recent decades, genomic data have also revealed extensive nuclear introgression in many animal groups, with implications for genetic and phenotypic diversity. [...]
On the feasibility of nonadaptive, nonsequential abiogenesis
Published: 2025-02-18
Subjects: Biochemistry, Biochemistry, Biophysics, and Structural Biology, Cellular and Molecular Physiology, Comparative and Evolutionary Physiology, Computational Biology, Evolution, Molecular Biology, Molecular Genetics, Other Ecology and Evolutionary Biology, Population Biology, Systems and Integrative Physiology Life Sciences, Systems Biology
The emergence of life from non-living matter remains one of the most profound unresolved questions in natural philosophy. Classical models derived from the Oparin-Haldane hypothesis assume a gradual (sequential), selective assembly of biological precursors. Yet, for more than a century, all experimental efforts in this direction have failed in their attempt to achieve material abiogenesis. May be [...]
A new perspective on Squamate social cognition – the use of semiochemicals
Published: 2025-02-07
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Evolution, Life Sciences
The Social Intelligence Hypothesis suggests that cognition might be key to enable animals to live in social groups. Especially social cognition is important as it allows animals to respond appropriately to conspecifics and ensure group cohesion. Social cognition is extensively studied in mammals and birds but to gain a broad understanding of the benefits of social cognitive processes in social [...]
Transmission of human handedness: a reanalysis
Published: 2025-02-03
Subjects: Evolution
Human handedness results from the interplay of genetic and cultural influences. A gene-culture co-evolutionary model for handedness was introduced by Laland et al. (1995), and the present study generalizes that model and the related analysis. We address ambiguities in the original methodology, particularly regarding maximum likelihood estimation, and incorporate sex differences in cultural [...]
Promoting the use of phylogenetic multinomial generalised mixed-effects model to understand the evolution of discrete traits
Published: 2025-01-30
Subjects: Ecology and Evolutionary Biology, Evolution
Phylogenetic comparative methods (PCMs) are fundamental tools for understanding trait evolution across species. While linear models are widely used for continuous traits in ecology and evolution, their application to discrete traits - particularly ordinal and nominal traits - remains limited. Researchers sometimes recategorise such traits into binary traits (0 or 1 data) to make them more [...]
The rise and fall of proboscidean ecological diversity
Published: 2025-01-21
Subjects: Evolution
Proboscideans were keystone Cenozoic megaherbivores and present a highly relevant case study to frame the timing and magnitude of recent megafauna extinctions against long-term macroevolutionary patterns. By surveying the entire proboscidean fossil history using model-based approaches, we show that the dramatic Miocene explosion of proboscidean functional diversity was triggered by their [...]
Does post-natal parental care influence cognitive development in a social gecko?
Published: 2025-01-06
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Evolution, Life Sciences
How cognition evolved remains a debated “hot-topic” in the field of animal cognition. Current hypotheses link variation in sociality, ecology, and more generally, environmental challenges to differences in cognitive development, both between as well as within species. Research supporting the Social Intelligence Hypothesis, which states that cognition evolved to deal with social challenges, is [...]
Unlocking the hidden dimensions of genomic diversity within species
Published: 2024-12-16
Subjects: Evolution, Genomics, Molecular Biology
The missing heritability problem, defined as the failure of genetic variants to explain variance in phenotypes, has been an unsolved issue in genetics for the past two decades. A potential solution to this problem stems from the idea that single nucleotide polymorphisms and copy-number variants, the most commonly studied forms of genomic diversity, do not represent the totality of the information [...]
The Development and Evolution of Arthropod Tagmata
Published: 2024-12-10
Subjects: Biology, Cell and Developmental Biology, Developmental Biology, Ecology and Evolutionary Biology, Entomology, Evolution, Integrative Biology, Life Sciences
The segmented body plan is a hallmark of the arthropod body plan. Morphological segments are formed during embryogenesis, through a complex procedure involving the activation of a series of gene regulatory networks. The segments of the arthropod body are organized into functional units known as tagmata, and these tagmata are different among the arthropod classes (e.g. head, thorax and abdomen in [...]
Don’t ask “when is it coevolution?” — ask “how?”
Published: 2024-12-09
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences
Coevolution is widely defined as specific, simultaneous, reciprocal adaptation by pairs of interacting species. This strict-sense definition arose from a desire for conceptual clarity, but it has never reflected the much wider diversity of ways in which interacting species may shape each other's evolution. As a result, much of the literature on the evolutionary consequences of species [...]
Synthesis of nature’s extravaganza: an augmented meta-meta-analysis on (putative) sexual signals
Published: 2024-12-06
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Evolution
Why have conspicuous characteristics evolved? Our augmented meta-meta-analysis of 41 meta-analyses, encompassing 375 animal species and 7,428 individual effect sizes, shows that the conspicuousness of (putative) sexual signals is positively related to attractiveness and benefits to mates, as well as to the fitness, condition, and other traits (e.g. body size) of their bearers. These patterns are [...]
Life, Death and Energy: Nature Selects No Free Lunch
Published: 2024-11-25
Subjects: Ecology and Evolutionary Biology, Evolution, Other Ecology and Evolutionary Biology
Brown et al. (2024) highlight that organisms invest a constant amount of energy into the production of viable offspring per unit of body mass per generation. This explains how diversity in life can exist. We interpret their result in relation to balancing offspring costs in real vs. physiological time.
Unrecognized lineages transform our understanding of diversification in a clade of lizards
Published: 2024-11-21
Subjects: Evolution
Evolutionary lineages at the tip of the tree of life can be genetically diverged yet phenotypically similar and therefore unrecognized by traditional morphology-based taxonomy. Such lineages, spanning the “grey zone of speciation” 1, are increasingly uncovered using genomic analyses. Here we show that incorporating this unrecognized lineage diversity into macro-evolutionary analyses yields novel [...]
Causes of recent changes in bill length in Crozet wandering albatross, a long-lived seabird
Published: 2024-11-21
Subjects: Ecology and Evolutionary Biology, Evolution, Population Biology
Phenotypes are changing in many wild populations, largely in response to environmental changes due to human activities. Phenotypic change can be driven by several mechanisms, with contrasted consequences for the persistence of populations. Identifying those mechanisms is key to understand current responses to human pressures and to predict the future fate of populations. Here we attempt to [...]
The evolutionary conflict theory of aging
Published: 2024-11-21
Subjects: Biology, Evolution
Why we age is an enduring mystery. This manuscript proposes aging is microevolutionarily opposed, but macroevolutionarily favored. Such a conflict between microevolution and macroevolution is highly unusual since traits that are harmful to the organism are usually harmful to the survival of the species. In the case of aging, however, a shorter lifespan makes a species better able to adapt to a [...]