Preprints
Filtering by Subject: Evolution
Transposable elements as drivers of reproductive isolation: A framework for testing hybridization-induced escalation of genetic conflicts
Published: 2026-02-26
Subjects: Evolution, Genetics, Genomics, Other Ecology and Evolutionary Biology
Contrary to long-held views, the exchange of genetic diversity between species by hybridization is now recognized as an important process contributing to the evolution of biodiversity. However, hybridization has molecular consequences beyond the exchange of genetic variation. The clash of divergent genomes upon hybridization can escalate genetic conflicts previously resolved in parental species – [...]
pynnotate: a flexible tool for retrieving and processing GenBank data in molecular evolution research and education
Published: 2026-02-26
Subjects: Bioinformatics, Ecology and Evolutionary Biology, Evolution
Pynnotate is a Python-based tool designed for automated retrieval, parsing, and extraction of annotated gene sequences from GenBank records. The tool addresses the common challenges researchers face when working with GenBank data, including inconsistent gene nomenclature, redundant sequences, and the need for standardised gene extraction across multiple taxa. Pynnotate operates through both a [...]
The Individualised Niche in Motion; quantifying individualised niches with movement data
Published: 2026-02-26
Subjects: Aquaculture and Fisheries Life Sciences, Behavior and Ethology, Evolution, Ornithology, Other Animal Sciences, Other Ecology and Evolutionary Biology, Population Biology, Terrestrial and Aquatic Ecology, Zoology
Individuals of the same species often differ consistently in their use of resources, their responses to environmental gradients, and their movement decisions. Between-individual variation across niche axes has been shown to have important ecological consequences. Yet practical frameworks that translate modern tracking data into operational, comparable measures of niche individual specialisation [...]
Among-trait covariance and cross-year repeatability for direct and indirect individual effects in producer-scrounger behaviour in wild house sparrows
Published: 2026-02-20
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Evolution
Variation in social traits can be attributed to direct individual effects (DIEs) of the focal individual and indirect individual effects (IIEs) due to its social partners eliciting behavioural change, analogous to indirect genetic effects. Indirect effects affect the expressed phenotypic variation upon which selection can act, especially when they covary with direct effects, providing a potential [...]
Composite virulence: useful metric or conceptual trap?
Published: 2026-02-20
Subjects: Animal Diseases, Animal Experimentation and Research, Animal Sciences, Biodiversity, Biology, Ecology and Evolutionary Biology, Evolution, Immunity, Immunology and Infectious Disease, Immunology of Infectious Disease, Immunopathology, Life Sciences, Medical Microbiology, Microbiology, Other Ecology and Evolutionary Biology, Other Immunology and Infectious Disease, Parasitic Diseases, Parasitology, Pathogenic Microbiology, Plant Pathology, Research Methods in Life Sciences, Zoology
Virulence, the harm an infection causes to its host, is a cornerstone concept in ecology and evolution, yet it remains difficult to quantify because infection impact is multidimensional, dynamic, and context-dependent. Infections can reduce host performance through multiple, partially redundant routes (including mortality, fecundity loss, behavioural impairment, and physiological disruption), [...]
Social organisation predicts lifespan in mammals
Published: 2026-02-17
Subjects: Ecology and Evolutionary Biology, Evolution, Other Ecology and Evolutionary Biology, Population Biology
1. Recent comparative analyses have identified positive associations between social organisation and longevity in mammals, but independent replication with larger datasets is needed to establish the robustness of this pattern. 2. Here, we analysed maximum recorded lifespan, body mass, and social organisation data for 1,436 mammal species using Bayesian phylogenetic comparative methods, confirming [...]
A macroevolutionary gene network reveals diapause evolutionary dynamics beyond the circadian clock and predicts microevolution
Published: 2026-02-16
Subjects: Computational Biology, Evolution, Genomics, Other Genetics and Genomics, Population Biology
Diapause is an alternative developmental pathway evolved independently in many insects to synchronize life cycles with resource abundance. While subsets of this essential phenotype have long been studied at a single species level, the genomic basis of the full diapause syndrome remains poorly understood. Remaining unknown is whether convergent diapause syndromes employ shared mechanisms. This [...]
Life cycle complexity drives variation in thermal tolerance and plasticity
Published: 2026-02-09
Subjects: Biodiversity, Biology, Ecology and Evolutionary Biology, Entomology, Evolution, Integrative Biology, Life Sciences, Terrestrial and Aquatic Ecology, Zoology
Accumulating evidence suggests that heat tolerance varies substantially across insect development, yet patterns of variation remain difficult to generalise across species. We discuss how the diversity of insect developmental strategies shapes both the intensity and predictability of thermal environments across ontogeny, and how this likely generates variation in heat tolerance, plasticity, and [...]
The origins and diversification of hummingbird pollination in Bromeliaceae
Published: 2026-02-06
Subjects: Biodiversity, Biology, Botany, Ecology and Evolutionary Biology, Evolution, Plant Sciences
Bromeliaceae are a model group for understanding explosive Neotropical diversification, combining remarkable ecological breadth and high species richness, despite relatively recent evolutionary origins. Multiple drivers are hypothesised to accelerate bromeliad diversification, and hummingbird pollination is frequently proposed to be among the strongest. However, our understanding has been limited [...]
Superorganismal Anisogamy: a Comparative Test of an Extended Theory
Published: 2026-02-04
Subjects: Ecology and Evolutionary Biology, Entomology, Evolution, Life Sciences
Multicellular organisms and superorganisms (e.g., ant colonies) are both products of major evolutionary transitions in individuality, and they share many analogous traits. Theory developed to explain the evolution of one such trait, anisogamy, has recently been adapted to explain its superorganismal analogue: large egg-like queens and small sperm-like males. To test this theory with comparative [...]
The overlooked small terrestrial mammal taxa (Rodentia, Eulipotyphla, and Lagomorpha) in the evolution of coronaviruses
Published: 2026-01-28
Subjects: Ecology and Evolutionary Biology, Evolution, Genetics and Genomics, Life Sciences, Molecular Genetics, Other Ecology and Evolutionary Biology
Coronaviruses have been extensively detected in bats over the past few decades. However, increasing evidence suggests that other taxa, such as Rodentia, Eulipotyphla, and Lagomorpha, may have played a significant role in the ecology and evolution of some coronaviruses. Here, we compile recent contributions illuminating these mammals' enigmatic role in coronavirus evolution. We highlight how [...]
Psilocybin and the Evolutionary Significance of Altered Neural States: Interaction-Based Perspectives Beyond Deterrence Models
Published: 2026-01-28
Subjects: Behavioral Neurobiology, Ecology and Evolutionary Biology, Evolution, Life Sciences, Neuroscience and Neurobiology, Other Ecology and Evolutionary Biology
Psilocybin is a psychoactive tryptamine produced by a phylogenetically discontinuous yet ecologically diverse subset of fungi. Despite decades of chemical, pharmacological, and ethnobiological research, the evolutionary forces driving the emergence and persistence of this compound remain insufficiently explained. Recent hypotheses proposing that psilocybin evolved primarily as a deterrent against [...]
Is within-host viral community assembly shaped by local adaptation?
Published: 2026-01-27
Subjects: Ecology and Evolutionary Biology, Evolution, Life Sciences, Virology
Host-parasite coevolution describes the continuous reciprocal selection driving host defense and parasite infectivity, with direct consequences for disease dynamics. While abundant evidence exists for coevolution shaping host-parasite dynamics within the ‘one host-one parasite’ framework, hosts are typically infected by multiple parasites and the extent to which coevolutionary processes shape [...]
Developmental density shapes adult mate guarding strategies in an invertebrate
Published: 2026-01-19
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Entomology, Evolution, Life Sciences
Post-copulatory mate guarding is a widespread reproductive strategy that reduces sperm competition but can generate sexual conflict when male and female optima diverge. While mate guarding is known to respond plastically to immediate social conditions, the extent to which early-life social environments of both sexes shape adult guarding behaviour remains poorly understood. We experimentally [...]
How Large Cooperative Groups Avoid Local Competition
Published: 2026-01-19
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Evolution
Large cooperative groups are a common sight in nature. Their existence is puzzling, however, because local competition should keep groups relatively small. A simple but untested way large groups can avoid local competition is by increasing their resource base. We conducted a systematic review and phylogenetic meta-analysis to look for evidence of this effect in wild populations of cooperatively [...]