Preprints
Filtering by Subject: Ecology and Evolutionary Biology
Measuring biodiversity impact, change and restoration opportunity for business
Published: 2026-03-04
Subjects: Biodiversity, Ecology and Evolutionary Biology
Most pressures that cause biodiversity loss are driven by economic activity. There is significant interest from the private sector in understanding impacts and dependencies of business activity on biodiversity. However, measuring the impacts of direct and indirect business activities on biodiversity, including species, at multiple scales remains a considerable challenge. There are no currently [...]
Do harbour porpoise mortality records reflect living population structure? A matrix population model diagnostic
Published: 2026-03-04
Subjects: Ecology and Evolutionary Biology, Population Biology
Effective conservation of marine mammals depends on reliable demographic information, yet acquiring such data for highly mobile cetaceans is challenging. Harbour porpoises (Phocoena phocoena) are widely used as sentinel species, but much of what is known about their demography comes from opportunistic sources, such as stranding and bycatch records. While invaluable, these data may be subject to [...]
Three decades later: A resurvey of vegetation biodiversity in Italian coastal dunes
Published: 2026-02-26
Subjects: Biodiversity, Ecology and Evolutionary Biology, Life Sciences, Terrestrial and Aquatic Ecology
Mediterranean coastal dunes have undergone substantial transformations over the last 70 years due to increasing anthropogenic pressure and environmental change. However, most studies on dune vegetation dynamics have been conducted at local scales, limiting our understanding of long-term plant diversity trends across broader regions. Here, we present the first national-scale assessment of [...]
pynnotate: a flexible tool for retrieving and processing GenBank data in molecular evolution research and education
Published: 2026-02-26
Subjects: Bioinformatics, Ecology and Evolutionary Biology, Evolution
Pynnotate is a Python-based tool designed for automated retrieval, parsing, and extraction of annotated gene sequences from GenBank records. The tool addresses the common challenges researchers face when working with GenBank data, including inconsistent gene nomenclature, redundant sequences, and the need for standardised gene extraction across multiple taxa. Pynnotate operates through both a [...]
Beyond Observed Diversity: A Completeness-Based Invasion Theory
Published: 2026-02-26
Subjects: Ecology and Evolutionary Biology, Life Sciences, Other Ecology and Evolutionary Biology, Population Biology, Terrestrial and Aquatic Ecology
Charles Elton proposed that species-rich communities resist invasion better, but support is mainly from local studies, possibly because studies use observed richness alone, ignoring the dark diversity. I propose Completeness-Based Invasion Theory, linking invasibility inversely to community completeness, an index linking observed and dark diversity, enabling unified insights across scales.
Tapping into symbiosis to advance human microbiome research
Published: 2026-02-25
Subjects: Bacteriology, Ecology and Evolutionary Biology, Environmental Microbiology and Microbial Ecology Life Sciences, Life Sciences, Other Microbiology, Pathogenic Microbiology
In human microbiome research, the term commensal is often used to describe organisms that benefit their hosts. In ecology, where the term originates, a commensal organism has no impact on its host, whereas a mutualist organism benefits its host. While others have recognized this discrepancy in terminology use, old habits are hard to break, and the human microbiome community has continued in this [...]
A new conceptual framework for host-microbe symbiosis
Published: 2026-02-25
Subjects: Ecology and Evolutionary Biology, Life Sciences
Host-microbe relationships are studied across biological disciplines, with different but related discipline-specific conceptual frameworks arising from each of them. Without a unified framework that can be applied across all symbioses, we cannot do the interdisciplinary work necessary to understand the underlying rules that govern symbiosis. Here I present a new conceptual framework for [...]
A comparison of methods to assess selective disappearance and quantify ageing
Published: 2026-02-25
Subjects: Ecology and Evolutionary Biology, Research Methods in Life Sciences
1. Age-dependent change in traits at the population-level level can diverge from the within-individual ageing trajectory due to selective disappearance, the biased removal or death of individuals with certain phenotypes. 2. Commonly used methods to assess, and account for, selective disappearance have been developed for relatively simple settings. As such, we currently lack a clear understanding [...]
Fitness costs of environmentally relevant concentrations of pharmaceuticals and personal care products in freshwater fauna: a systematic review and meta-analysis
Published: 2026-02-24
Subjects: Ecology and Evolutionary Biology, Environmental Health Life Sciences, Terrestrial and Aquatic Ecology
Pharmaceuticals and personal care products (PPCPs) are now ubiquitous in freshwater ecosystems, entering water bodies through widespread use and incomplete removal during wastewater treatment. These compounds include psychoactive substances, antibiotics, anti-inflammatory drugs, hormones, chemotherapeutic drugs, fragrances, preservatives, UV filters, plasticizers and others. Although many studies [...]
Anecdote: When courtship blurs: a case of male-directed sexual signaling in house crickets (Acheta domesticus)
Published: 2026-02-24
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology
Same-sex sexual behaviour has been reported across diverse animal taxa and is increasingly understood as a flexible outcome of sexual signaling rather than an evolutionary anomaly. In insects, such behaviours are often temporary, context dependent, and expressed alongside opposite-sex courtship. This pattern has led to increasing emphasis on condition-dependent mating filters, defined as how [...]
A Niche in the Machine: The Promise of AI Foundation Models for Species Distribution Modeling
Published: 2026-02-24
Subjects: Ecology and Evolutionary Biology, Life Sciences
Species distribution models (SDM) are fundamental tools for conservation, yet methodological progress has stalled. Despite two decades of refinement, traditional approaches – MaxEnt, boosted regression trees, random forests – have approached a performance ceiling, and deep learning has failed to break through on species distribution data. TabPFN, a foundation model that learns to perform Bayesian [...]
A new effect size for meta-analysis of magnitude: lnM
Published: 2026-02-23
Subjects: Ecology and Evolutionary Biology, Life Sciences, Statistics and Probability
Meta-analyses in ecology and evolution often consider the magnitude of differences between groups rather than their direction. Yet, a common practice is to coerce signed effects (e.g., d and response ratio) into magnitudes by taking absolute values. This transformation induces strong upward bias and non-normal (Gaussian) sampling distributions, violating the assumptions of standard meta-analytic [...]
Drivers of taxonomic bias in ecology and evolution: insights from ethologists and behavioural ecologists
Published: 2026-02-23
Subjects: Ecology and Evolutionary Biology
Taxonomic bias (i.e. the disproportionate attention given to some taxa relative to their diversity) remains a major barrier to achieving generality in ecology and evolution, yet its underlying causes are poorly understood. Here, we proposed a general framework to explain taxonomic bias along three major axes, supported by evidence from a survey of 868 researchers’ taxonomic experiences. First, [...]
Among-trait covariance and cross-year repeatability for direct and indirect individual effects in producer-scrounger behaviour in wild house sparrows
Published: 2026-02-20
Subjects: Behavior and Ethology, Ecology and Evolutionary Biology, Evolution
Variation in social traits can be attributed to direct individual effects (DIEs) of the focal individual and indirect individual effects (IIEs) due to its social partners eliciting behavioural change, analogous to indirect genetic effects. Indirect effects affect the expressed phenotypic variation upon which selection can act, especially when they covary with direct effects, providing a potential [...]
Contribution and applications of demographic concepts to conservation
Published: 2026-02-20
Subjects: Ecology and Evolutionary Biology
Studying the demographic processes that shape how populations respond to environmental changes has long provided insights for conservation biology. Recent theoretical advances have deepened our understanding of these processes, yet their application in conservation remains unclear. We conducted a literature search to examine how six key demographic concepts — life-history trade-offs, the [...]